SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46610

Length: 266 nt

UniGene Fasta

>sp_v3.0_unigene46610
AGAAAGCTGAGGAGGAGAATTCTGGATATAAGCGAAAGCTTTTCAACTTTCTTGGTAATTGCGTTCCAGGAGCTAAGTTTTCAGTAGACGTAAAATCTGATGAGGAAGAGAAGGTGCATCAGTGGTTAGCCACCATGGCAACGGCAGACAAGAACATAGTGTTTGAGTATGTGCATTCAACCGAGAGAGGCCTCAGTTTTAAGGAAGCAGATGAGCGGCTAAAGAAAGTTGGGCCAAATGTCCCTGTGGGGAATCTTTATTCACCT

Ace file of the UniGene sp_v3.0_unigene46610

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	endoplasmic reticulum [ER]-type calcium ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2]	-	-	7.0e-15	53%
FL-Next	tr=Endoplasmic reticulum [ER]-type calcium ATPase; subsp. trichocarpa).	-	-	0.0	53%

Source	ECs	Term	Type	e value	Identity
AutoFact	Magnesium-importing ATPase.	EC:3.6.3.2	-	7.0e-15	53%

Source	Gene names
Sma3	POPTRDRAFT_818433;

Source	InterPros	Term	Type	Identity
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3	ATPase, P-type cation-transporter, N-terminal	IPR004014	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	ATPase, P-type cation-transporter, C-terminal	IPR006068	-	-
Sma3	ATPase, P-type, magnesium-translocating	IPR006415	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002306511.1	endoplasmic reticulum [ER]-type calcium ATPase [Populus trichocarpa]	3.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9H6P8

Fln msg: Distance to subject end: 852 aas, your sequence is shorter than subject: 88 - 971

Fln protein: KAEEENSGYKRKLFNFLGNCVPGAKFSVDVKSDEEEKVHQWLATMATADKNIVFEYVHSTERGLSFKEADERLKKVGPNVPVGNLYSP

Protein Length: 89

Fln nts: AGAAAGCTGAGGAGGAGAATTCTGGATATAAGCGAAAGCTTTTCAACTTTCTTGGTAATTGCGTTCCAGGAGCTAAGTTTTCAGTAGACGTAAAATCTGATGAGGAAGAGAAGGTGCATCAGTGGTTAGCCACCATGGCAACGGCAGACAAGAACATAGTGTTTGAGTATGTGCATTCAACCGAGAGAGGCCTCAGTTTTAAGGAAGCAGATGAGCGGCTAAAGAAAGTTGGGCCAAATGTCCCTGTGGGGAATCTTTATTCACCT

Fln Alignment:

CL9836Contig1___YKRKLFNFLGN---CVPGAKFSVD--VKSDEEEKVHQWLATMATADKNIVFEYVHSTERGLSFKEADERLKKVGPNVPVG
B9H6P8_______________FPRSVFNYLGLGRLAVSGSADKSDGSQRSEEEEKVYSWLYALAQSDKDLVFEYVRSTERGLSFTEADRRLRENGPNVPLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain