SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46488

Length: 233 nt

UniGene Fasta

>sp_v3.0_unigene46488
GATCCGCAGTATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGAAAGTTACTTGCAAAATTATGGCACCATTATATTTCCAAGCTATTTTGCCCCACTTTTCCATAGCTTTTTTTCTTGCCTAGTGCCTCTGGATACTGATTCTAGGGTTGCAATGACAGTCAATGCTTATCCTGAGATCCTGAAGCAACTGACATCAATTTCATCAGATGCAGGGA

Ace file of the UniGene sp_v3.0_unigene46488

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to protein kinase family protein / WD-40 repeat family protein n=1 Tax=Vitis vinifera RepID=UPI0001984267	-	-	2.0e-19	60%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	60%

Source	Gene names
Sma3	GSVIVT00016649001; OJ1004_E04.19; OsI_09285; OsJ_08723; RCOM_1049310;

Source	GOs	Term	Type	Identity
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	HEAT	IPR000357	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3		IPR017442	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G29380.1	protein kinase family protein / WD-40 repeat family protein chr4:14458822-14464692 FORWARD LENGTH=1494	2.0e-19	53%
RefSeq	Arabidopsis thaliana	NP_194667.1	phosphoinositide-3-kinase, regulatory subunit 4, p150 [Arabidopsis thaliana]	2.0e-19	53%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HGX9

Fln msg: Distance to subject end: 1200 aas, your sequence is shorter than subject: 77 - 1545

Fln protein: IRSMVRHMIQLDPEARLSCESYLQNYGTIIFPSYFAPLFHSFFSCLVPLDTDSRVAMTVNAYPEILKQLTSISSDAG

Protein Length: 78

Fln nts: GATCCGCAGTATGGTTCGTCATATGATCCAATTGGATCCAGAGGCACGCCTGTCTTGTGAAAGTTACTTGCAAAATTATGGCACCATTATATTTCCAAGCTATTTTGCCCCACTTTTCCATAGCTTTTTTTCTTGCCTAGTGCCTCTGGATACTGATTCTAGGGTTGCAATGACAGTCAATGCTTATCCTGAGATCCTGAAGCAACTGACATCAATTTCATCAGATGCAGGGA

Fln Alignment:

CL8452Contig1___IRSMVRHMIQLDPEARLSCESYLQNYGTIIFPSYFAPLFHSFFSCLVPLDTDSRVAMTVNAYPEILKQLTSISS
F6HGX9_______________IRKMILHMIQLDPESRFSAESYLQNYASILFPSYFSPFLHNFYSCLNPLDSDTRVAVCQSLFHEIHKQMMSNAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain