SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46411

Length: 210 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene46411
TCTATCACCGAACAGCTTAAAAGTTGTGGCTACCAACCATGGGGAAAAGAGCAGATGTATAACGGGCGGACCGGTGGCAAAATGCAAACAAGAATATTCGTTGGTCCAACATACTATCAGCGGCTCATACACATGGCAGAAGACAAAATTAAATACCGGAATCATGGGCCTGTGCATCCTTTAACTCGACAGCCAGTAGCTGATCGAAAA

Ace file of the UniGene sp_v3.0_unigene46411 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Ginkgo biloba RepID=Q1L6W2_GINBI	-	-	9.0e-31	86%
FL-Next	sp=DNA-directed RNA polymerase subunit beta; Podocarpus totara. Plastid; Chloroplast.	-	-	0.0	36%
Sma3	DNA-directed RNA polymerase	-	-	9.572e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA-directed RNA polymerase.	EC:2.7.7.6	-	3.157e-30	-

Source	KEGGs	Term	e value	Identity
Sma3	Purine metabolism	00230	3.157e-30	%
Sma3	Pyrimidine metabolism	00240	3.157e-30	%
Sma3	Metabolic pathways	01100	3.157e-30	%

Source	Gene names
Sma3	At3g18090; At3g23780; B0414F07.4; EMB1989; GSVIVT00018575001; GSVIVT00032775001; LOC_Os03g44484; MICPUCDRAFT_31670; MICPUN_93697; NRPD2a; OJ1590_E05.24; OSJNBa0063C18.1; OSJNBb0079B02.6; OSTLU_13673; Os03g0646800; Os04g0641000; Os08g0171600; OsI_12811; Os

Source	GOs	Term	Type	Identity
Sma3	DNA-directed RNA polymerase IV complex	GO:0000418	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nuclear heterochromatin	GO:0005720	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	-
Sma3	ribonucleoside binding	GO:0032549	Molecular Function	-
Sma3	DNA methylation	GO:0006306	Biological Process	-
Sma3		GO:0006350	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	RNA polymerase, beta subunit, conserved site	IPR007121	-	-
Sma3	RNA polymerase Rpb2, domain 7	IPR007641	-	-
Sma3	RNA polymerase Rpb2, domain 2	IPR007642	-	-
Sma3	RNA polymerase, beta subunit, protrusion	IPR007644	-	-
Sma3	RNA polymerase Rpb2, domain 3	IPR007645	-	-
Sma3	RNA polymerase Rpb2, domain 4	IPR007646	-	-
Sma3	RNA polymerase Rpb2, domain 5	IPR007647	-	-
Sma3	RNA polymerase Rpb2, OB-fold	IPR014724	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G23780.1	NRPD2A, DRD2, NRPD2, DMS2, NRPE2 nuclear RNA polymerase D2A chr3:8567971-8573819 REVERSE LENGTH=1172	5.0e-29	68%
RefSeq	Arabidopsis thaliana	NP_001189957.1	nuclear RNA polymerase D2A [Arabidopsis thaliana]	6.0e-29	68%
RefSeq	Populus trichocarpa	XP_002324332.1	predicted protein [Populus trichocarpa]	6.0e-27	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: G8HSW7

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 70 - 1089

Fln protein: SITEQLKSCGYQPWGKEQMYNGRTGGKMQTRIFVGPTYYQRLIHMAEDKIKYRNHGPVHPLTRQPVADRK

Protein Length: 71

Fln nts: TCTATCACCGAACAGCTTAAAAGTTGTGGCTACCAACCATGGGGAAAAGAGCAGATGTATAACGGGCGGACCGGTGGCAAAATGCAAACAAGAATATTCGTTGGTCCAACATACTATCAGCGGCTCATACACATGGCAGAAGACAAAATTAAATACCGGAATCATGGGCCTGTGCATCCTTTAACTCGACAGCCAGTAGCTGATCGAAAA

Fln Alignment:

CL7581Contig1___GKEQMYNGRTGGKMQTRIFVGPTYYQRLIHMAEDKIKYRNHGPVHPLTRQPVADR
G8HSW7_______________GKHRLIDGRTGEVFEQPVTIGIAYMSKLCHQVDDKIHARSSGPYARVTQQPLKGR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain