SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46369

Length: 260 nt

UniGene Fasta

>sp_v3.0_unigene46369
AGAGACTTAGTGTTGAAGCTGGTTCTCCTCTGGGATGGAGAGAATATGTGGGCTCCAAGGGGCTAATACAGGCTGTAAGAAAATTTGGAGCTAGTGGAGCTTACCTGGATGTCTTCGAGAAAATGGGATTTACAGAAGAAAACGTAACAGAACTGGCTAAATCTCTTCTCAAGTAGATAGCTGTATTCTAAGCTTCCATGTTCATCCCACGCAAAACAGGTTTGGTTTAGAATCAGCAACACCATAGTTTACTACATGAG

Ace file of the UniGene sp_v3.0_unigene46369

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Transketolase, putative n=1 Tax=Ricinus communis RepID=B9T0B2_RICCO	-	-	6.0e-17	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%

Source	Gene names
Sma3	GSVIVT00018168001; PHYPADRAFT_221481; POPTRDRAFT_805600; RCOM_0262670;

Source	GOs	Term	Type	e value	Identity
Sma3	transketolase activity	GO:0004802	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Transketolase, N-terminal	IPR005474	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	Transketolase, C-terminal	IPR005476	-	-
Sma3	Transketolase, bacterial-like	IPR005478	-	-
Sma3	Transketolase-like, C-terminal	IPR015941	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315311.1	predicted protein [Populus trichocarpa]	1.0e-20	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNE5

Fln msg: your sequence is shorter than subject: 58 - 224

Fln protein: RLSVEAGSPLGWREYVGSKGLIQAVRKFGASGAYLDVFEKMGFTEENVTELAKSLLK*

Protein Length: 59

Fln nts: AGAGACTTAGTGTTGAAGCTGGTTCTCCTCTGGGATGGAGAGAATATGTGGGCTCCAAGGGGCTAATACAGGCTGTAAGAAAATTTGGAGCTAGTGGAGCTTACCTGGATGTCTTCGAGAAAATGGGATTTACAGAAGAAAACGTAACAGAACTGGCTAAATCTCTTCTCAAGTAG___ATAGCTGTATTCTAAGCTTCCATGTTCATCCCACGCAAAACAGGTTTGGTTTAGAATCAGCAACACCATAGTTTACTACATGAG

Fln Alignment:

CL6747Contig1___RLSVEAGSPLGWREYVGSKGLIQAVRKFGASGAYLDVFEKMGFTEENVTELAKSLL
A9NNE5_______________RVSVEAGSTFGWERYLGSKGKAVGIDRFGASAPIGILYKEFGLTAENVVATAKQVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain