SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46268

Length: 1272 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene46268

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	helicase associated domain-containing protein [Arabidopsis thaliana] gb\|AEE33493.1\| helicase associated domain-containing protein [Arabidopsis thaliana]	-	-	0.0	50%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	56%

Source	Gene names
Sma3	At1g58050; At1g58060; B0308C03.3; GSVIVT00035406001; MICPUN_71905; OSJNBa0084A10.14; Os04g0432200; OsI_15944; OsJ_14858; POPTRDRAFT_827443; RCOM_1374260; T15M6.6; T15M6.7; VITISV_002615;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G58060.1	RNA helicase family protein chr1:21489480-21501775 REVERSE LENGTH=1459	51%
RefSeq	Arabidopsis thaliana	NP_176103.2	helicase associated domain-containing protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002328702.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9N0C3

Fln msg: your sequence is shorter than subject: 208 - 326

Fln protein: GSLLADIGFIELPKVDNKKKDDIDKWLDDLSKPFNIYSHHSPIIKSILCAGLYPNVASIEDYIKAGHIGSAPSKRPCWTDGRREVFIHPTSINSRTSEFRHPFMVFLDKVETSKVFLRDTTIISPYALLLFGGSISIQHQTGSVTVDSWLKMNATAQTAVLFKKLRLALRSILQELLQKPKERATVAESEVIRSITQLLIDEEKPQL*

Protein Length: 209

Fln nts: TGGAAGTCTATTGGCAGACATTGGGTTTATTGAACTTCCAAAGGTAGATAACAAAAAGAAAGATGATATTGACAAGTGGCTTGATGATTTGTCCAAACCTTTTAACATCTATTCTCACCATTCTCCAATAATAAAGTCTATTTTATGTGCAGGATTGTATCCTAATGTGGCATCAATAGAGGATTACATAAAAGCTGGACACATTGGCTCAGCACCAAGCAAGCGGCCTTGTTGGACTGATGGACGACGAGAAGTTTTTATCCATCCTACATCAATAAACTCTAGAACATCTGAGTTTCGTCATCCATTTATGGTCTTCTTGGACAAGGTAGAAACCAGTAAAGTATTTTTGCGTGATACGACGATCATTTCTCCATATGCACTTCTTTTGTTTGGTGGTTCAATTAGTATTCAACATCAGACTGGATCTGTAACTGTAGATAGTTGGTTGAAAATGAATGCAACAGCCCAAACAGCAGTTCTCTTCAAGAAGCTCCGCTTGGCACTTCGTTCAATATTGCAAGAATTACTTCAAAAACCAAAGGAACGAGCAACAGTGGCAGAAAGTGAAGTTATCCGTTCCATCACACAATTATTGATAGACGAAGAAAAGCCCCAACTTTAG___CTTATCTAAAGAAAGATGGATGTACATGGATATTTCTGCTAATGTTGTTGATAAAAGATGGATGTTTTCTTTGGGGATGGCAGGTGGGAAGTCTGAATTCTGTATGCTATACAGCTAAAATAGGTGGTTTAACCTGATTAGTTCCTCTGTGACAAGAGGCAATGGAATGATTTAATCACATCCCAAGTTTTGACACCATTAGCTTGACCTATGCAGTTCTGTTACAGTGCAAAGGGGTTGACAAAGTGGAGTCCAGACTGAATCATCACTAAGGAAACAGTGCATGTGCCTGTTGCAATACAAGTTGACTGGAAATTAAGATGCTCATGCTTTATTGGTTCATTCCCAAAATTGAACGGTATAATGTGATACTGGACTTAAGTGTGACTAAAGCTAAATATTTTGAAGACACGCCAGTTGTATCAAAACTCAAATTATGGGAACAATTGACAGATGTCTCTGTAAGGCTCCCTTCAGTTATTTATGGAAATGGAATGACCTAAATGCTATGGAAAGATATTTCCATCAAGCAATTAGTCCATTGATTCGTTATACCAATGCATTGTTTTTGTCAGTATTTCTACGTTAATATAGGTAAGTGCCAGCAGGAAAATGATGATGGTTGAAATAAATATCAGTTGATTCTA

Fln Alignment:

CL5011Contig1___GSLLADIGFIELPXXXXXXXXXXXXXXXXXXX---PFNIYSHHSPIIKSILCAGLYPNVASIEDYIKAGHIG-----SAPSKR--PCWTDGRREVFIHPTSINSRTSEFRHPFMVFLDKVETSKVFLRDTTIISPYALLLFGGSISIQHQTGSVTVDSWLKMNATAQTAVLFKKLRLALRSILQELLQKPKERATVAESEVIRSITQLLIDEEKPQ
B9N0C3_______________GTLLADIGLISIPKSYQVGRMKKENLDSWLSEKSQPFNMYSHHSSLVKAILCAGLYPNVAATELGITAATLNGLKQSSRPGKKDHPIWYDGRREVHIHPSSVNCNMKAFPHPFLVFLEKVETNKVFLRDTTIISPFSILLFGGEINIQHQTGLLTIDGWLKLKASAQYAVLFKELRSTLHALLKELIRKP-ENATLVDNEVVKSMIQLLLDEDKPQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain