SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46244

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene46244
CATGGCCCGTGGAATTAGGGCAACGGCCCTCTCCATACTTCAACGCCGGCATGTTCGTTTTTGAGCCGAGTCAGCTGACCTTCGACTGCCTTTTGGAAACTCTGATGGCCACTGTGCCAACGCCCTTCGCAGAACAGGATTTCTTGAACGTGTTTTTTGAGAAGGTATACAAGCCCATCCCCTTGGTGTACAATCTGGTTCTGGCCATGCTGTGGAGACATCCCCAGAACGTGGACTTGGAC

Ace file of the UniGene sp_v3.0_unigene46244

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	galactinol synthase 1 [Verbascum phoeniceum]	-	-	1.0e-29	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Galactinol synthase	-	-	0.0	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	4.244e-30	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		4.244e-30	%

Source	Gene names
Sma3	AT4g26250; At1g09350; At1g56600; At1g60450; At1g60470; At2g47180; At4g26250; At5g23790; At5g30500; AtGolS1; AtGolS2; AtGolS3; CjGolS; F14J9.1; F25P12.95; F8A5.2; GAS1; GAS2; GOLS1; GS; GSVIVT00002727001; GSVIVT00019669001; GSVIVT00022558001; GSVIVT0002256

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G60470.1	AtGolS4, GolS4 galactinol synthase 4 chr1:22279181-22280454 REVERSE LENGTH=334	2.0e-37	74%
RefSeq	Arabidopsis thaliana	NP_176250.1	galactinol synthase 4 [Arabidopsis thaliana]	3.0e-37	74%
RefSeq	Populus trichocarpa	XP_002314613.1	predicted protein, partial [Populus trichocarpa]	3.0e-39	73%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQ99

Fln msg: Distance to subject end: 94 aas, your sequence is shorter than subject: 80 - 346

Fln protein: WPVELGQRPSPYFNAGMFVFEPSQLTFDCLLETLMATVPTPFAEQDFLNVFFEKVYKPIPLVYNLVLAMLWRHPQNVDLD

Protein Length: 81

Fln nts: CATGGCCCGTGGAATTAGGGCAACGGCCCTCTCCATACTTCAACGCCGGCATGTTCGTTTTTGAGCCGAGTCAGCTGACCTTCGACTGCCTTTTGGAAACTCTGATGGCCACTGTGCCAACGCCCTTCGCAGAACAGGATTTCTTGAACGTGTTTTTTGAGAAGGTATACAAGCCCATCCCCTTGGTGTACAATCTGGTTCTGGCCATGCTGTGGAGACATCCCCAGAACGTGGACTTGGAC

Fln Alignment:

CL4539Contig1___WPVELGQRPSPYFNAGMFVFEPSQLTFDCLLETLMATVPTPFAEQDFLNVFFEKVYKPIPLVYNLVLAMLWRHPQNVDLD
A9NQ99_______________WPTELGQRPSLYFNAGMFVFEPSQLTFDCLLETLMATVPTPFAEQDFLNMFFEKIYKPIPLVYNLVLAMMWRHPQNVDLD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain