SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46226

Length: 2472 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene46226
GGACGCGGTGTCCTTTTTTCTTCTGAAACCATCCGAGGATAGTACGTCTGTTTAGTTAAAGATAGAAGGACAATTTGGTAGACAGAATCGCGCTGCAATTCAAATTTTGCGACCGGCCGTCTAAGGTAAACCTCTGGAAAAAATGATCGGCTTTTTGAGCGGAAAATGTTATGGATGGCAGACTTATTTTCCATTTCAATAAAATTAAAATCTGGGGGTTTGTGATCAAAGGAGAAAACAGGTCTGAAAAAAGATCATATGAATTGCTTTGTGCATGAAATCTATGCAATTGTAACTTTTATATTGAATTGACTTTTGAATGTAAGTTCAGAAGAGCGCCGAAGTTATTTTCAATGCTGTGATTATTGCAGTGTGGAAATAGGTATGCTGTTCGTTCCGTCCTTGTTTTAGTGAGGGTTCAGCATAACTCCACGTTTTTTAGATACCCACGTCGTCACCTTGGCTTGGGAGGTCTGCACAATAGATTTTTTTTTTAATCATCGCAAATCATATCGATTTTTTTCATCATCGTCGTTTACACTGTGATGAGAAGGCAAAAGCTACAGGGATTAAGATATTGCGAAGGAAACACCATGGTCTGTCTCAATTCCTTTCCCGCTTCTGTGGCTTCTGGTGAATCATGGAACCCAGCATGTTCTTCGCATCTGCTGCCCCAAAATCTTTCTCCCAATTGCTTTATGCCTTCAGATTACTCTGTTTTTCCGTCCTCATCTTCTGACAAGGAACTGTCTAATTCCACCTTCGTTCAGCCAAATGCCAGTTCGCATATGATTATGCCAGGGTCGACGACCTTATGTACCAATCTTCAGTCTTCCAAGCCTATTACTTCTCAGCAGCAGCAGCCTCCTTTTGACGGTTTGCCTTTAATATATCCACCGTCGAAGAGTCCAGTTCAGTCTCAACAATCTGGGGTTTGCGAAGCTGCATTCTTAAGGGATTCTACTAAGTCCAATAGTCAAGATGTAGGATTGGGGGATCTATTCCATGATTTTCTTATCTTTCCTCCGAATGGTTTAGAATGCAGCCAACCCCTTGAGAATATTGATGTAAGTCGAATTGCCCCTCAATATGATCCAAATCAAAGTGAATGGCAAACATGGGCGGATAAACTTGCTTCATCGGATGATGCATCGTGTGCTGGTTTTTGGAAAGAGCCCGCGGACGTCAACAACAATCCAAAAACTGGGCTGAACACAATCAATCAGACATCAACAGTTTCAACTACAAATGTGGGATCGCACCAGACACAACTACAGCCGCAGCTTTGCCAACAGATTGTTGCCCCCACAGTAGGTACTCATCTGGCTACCACTCCCACAGCATGTGCGACTACAACATCCAGTAAGACACGATTAAAGTGGACCCCAGAGCTCCATGAGCGTTTTGTGGAAGCTGTTAATCAACTTGGTGGTGCCGAGAGAGCCACACCAAAAGGGGTTTTAAAGTTTATGGACTCAGAAGGGTTGACAATTTATCATGTCAAAAGTCACCTTCAGAAGTATCGGATTGCCAAGTACATTCCAAAGCATGCGGACGGGATAGAAGACAAAACGAGGAACTCTTTTGATACTTCTGCATCTTTTGACCTAAAAACGGGCATGCAAATTACGGAGGCGTTACGCTTACAGATGGATGTTCAGAAGAAGTTACACGAGCAGCTTGAGACCCAAAGAACTTTACAATTACAGATAGAAGAGTATGGCAAACGCCTACAGAAGATGCTTGAAGAGCAGCAACAAACAGCCAGAAAAATAGAATGCGACCCTAAGGCGGCTGATGACCAAAGTAAATCAGATGCTGTGGGAGGCTCAACTCCAGAATGAGAAGTTGGATGAGAATAACATAAGATGACATTACATGCTGGTTCGAAAACTTTGATCAACCTTATCAGCAATACACTGATTCACAACTGAAACCTTTCTACATGCTTTGTAATTTGTTCGCAACTTATTTTCTCAATCATTACCTGCGTGGTACTGGTATGTCATGTAGAGTATCAATCTGACTGGCAGAAGTCCACTGACTAGGGATTGGTGAGACCCTGAAAGTAATCATATTAACCATGAAAGTGAGCATTACTTGAATGCCTTTGGAGAAAATCTCAAATCTGTAAAAGTATTGTTATTCATCCAAAATGCTCTGGGAATATTTGGAGAATGAGAACAGGGTTGGCATCTAAACCGTAGCGAGGCAAGGATTTATGTTATTCCAGGTTTTTCTTAAACAAATTCCTTTTGAAGCTTTAGACAAAGATGAAAGGCGGCCATGATTTACAATATTGTAGGGTCTTTTCTCACTTTTTGACACAAGTCTCAGCAGGCCAGCTGGTGAATCGGAGACGTTCTATGAAAAGCTTGCGTGTCCTTTGAACCTATACCATGTATAGACTCCCAGTGGATAAAGTTATTGTAATAAAATATTGTACTTTTTTTCCAAAGAAAAAAACACTTC

Ace file of the UniGene sp_v3.0_unigene46226 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain	-	-	1.0e-06	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	MYB-CC type transfactor	-	-	1.427e-28	-

Source	Gene names
Sma3	APL; AT1G79430; AT4g13640; At1g69580; At1g79430; At2g01060; At2g01060/F23H14.3; At2g20400; At3g04030; At3g04450; At3g04450/T27C4_10; At3g24120; At4g13640; At5g06800; At5g18240; B0403H10-OSIGBa0105A11.2; CHLREDRAFT_196473; F18A5.30; GSVIVT00002102001; GSVI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3		GO:0045449	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002301855.1	predicted protein, partial [Populus trichocarpa]	1.00053e-42	47%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKH4

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 103 aas, putative chimeric sequence, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 433 - 565

Fln protein: MRRQKLQGLRYCEGNTMVCLNSFPASVASGESWNPACSSHLLPQNLSPNCFMPSDYSVFPSSSSDKELSNSTFVQPNASSHMIMPGSTTLCTNLQSSKPITSQQQQPPFDGLPLIYPPSKSPVQSQQSGVCEAAFLRDSTKSNSQDVGLGDLFHDFLIFPPNGLECSQPLENIDVSRIAPQYDPNQSEWQTWADKLASSDDASCAGFWKEPADVNNNPKTGLNTINQTSTVSTTNVGSHQTQLQPQLCQQIVAPTVGTHLATTPTACATTTSSKTRLKWTPELHERFVEAVNQLGGAERATPKGVLKFMDSEGLTIYHVKSHLQKYRIAKYIPKHADGIEDKTRNSFDTSASFDLKTGMQITEALRLQMDVQKKLHEQLETQRTLQLQIEEYGKRLQKMLEEQQQTARKIECDPKAADDQSKSDAVGGSTPE*

Protein Length: 434

Fln nts: GGACGCGGTGTCCTTTTTTCTTCTGAAACCATCCGAGGATAGTACGTCTGTTTAGTTAAAGATAGAAGGACAATTTGGTAGACAGAATCGCGCTGCAATTCAAATTTTGCGACCGGCCGTCTAAGGTAAACCTCTGGAAAAAATGATCGGCTTTTTGAGCGGAAAATGTTATGGATGGCAGACTTATTTTCCATTTCAATAAAATTAAAATCTGGGGGTTTGTGATCAAAGGAGAAAACAGGTCTGAAAAAAGATCATATGAATTGCTTTGTGCATGAAATCTATGCAATTGTAACTTTTATATTGAATTGACTTTTGAATGTAAGTTCAGAAGAGCGCCGAAGTTATTTTCAATGCTGTGATTATTGCAGTGTGGAAATAGGTATGCTGTTCGTTCCGTCCTTGTTTTAGTGAGGGTTCAGCATAACTCCACGTTTTTTAGATACCCACGTCGTCACCTTGGCTTGGGAGGTCTGCACAATAGATTTTTTTTTTAATCATCGCAAATCATATCGATTTTTTTCATCATCGTCGTTTACACTGTG_-_ATGAGAAGGCAAAAGCTACAGGGATTAAGATATTGCGAAGGAAACACCATGGTCTGTCTCAATTCCTTTCCCGCTTCTGTGGCTTCTGGTGAATCATGGAACCCAGCATGTTCTTCGCATCTGCTGCCCCAAAATCTTTCTCCCAATTGCTTTATGCCTTCAGATTACTCTGTTTTTCCGTCCTCATCTTCTGACAAGGAACTGTCTAATTCCACCTTCGTTCAGCCAAATGCCAGTTCGCATATGATTATGCCAGGGTCGACGACCTTATGTACCAATCTTCAGTCTTCCAAGCCTATTACTTCTCAGCAGCAGCAGCCTCCTTTTGACGGTTTGCCTTTAATATATCCACCGTCGAAGAGTCCAGTTCAGTCTCAACAATCTGGGGTTTGCGAAGCTGCATTCTTAAGGGATTCTACTAAGTCCAATAGTCAAGATGTAGGATTGGGGGATCTATTCCATGATTTTCTTATCTTTCCTCCGAATGGTTTAGAATGCAGCCAACCCCTTGAGAATATTGATGTAAGTCGAATTGCCCCTCAATATGATCCAAATCAAAGTGAATGGCAAACATGGGCGGATAAACTTGCTTCATCGGATGATGCATCGTGTGCTGGTTTTTGGAAAGAGCCCGCGGACGTCAACAACAATCCAAAAACTGGGCTGAACACAATCAATCAGACATCAACAGTTTCAACTACAAATGTGGGATCGCACCAGACACAACTACAGCCGCAGCTTTGCCAACAGATTGTTGCCCCCACAGTAGGTACTCATCTGGCTACCACTCCCACAGCATGTGCGACTACAACATCCAGTAAGACACGATTAAAGTGGACCCCAGAGCTCCATGAGCGTTTTGTGGAAGCTGTTAATCAACTTGGTGGTGCCGAGAGAGCCACACCAAAAGGGGTTTTAAAGTTTATGGACTCAGAAGGGTTGACAATTTATCATGTCAAAAGTCACCTTCAGAAGTATCGGATTGCCAAGTACATTCCAAAGCATGCGGACGGGATAGAAGACAAAACGAGGAACTCTTTTGATACTTCTGCATCTTTTGACCTAAAAACGGGCATGCAAATTACGGAGGCGTTACGCTTACAGATGGATGTTCAGAAGAAGTTACACGAGCAGCTTGAGACCCAAAGAACTTTACAATTACAGATAGAAGAGTATGGCAAACGCCTACAGAAGATGCTTGAAGAGCAGCAACAAACAGCCAGAAAAATAGAATGCGACCCTAAGGCGGCTGATGACCAAAGTAAATCAGATGCTGTGGGAGGCTCAACTCCAGAATGAGAAGTTGGATGAGAATAACATAAGATGACATTACATGCTGGTTCGAAAACTTTGATCAACCTTATCAGCAATACACTGATTCACAACTGAAACCTTTCTACATGCTTTGTAATTTGTTCGCAACTTATTTTCTCAATCATTACCTGCGTGGTACTGGTATGTCATGTAGAGTATCAATCTGACTGGCAGAAGTCCACTGACTAGGGATTGGTGAGACCCTGAAAGTAATCATATTAACCATGAAAGTGAGCATTACTTGAATGCCTTTGGAGAAAATCTCAAATCTGTAAAAGTATTGTTATTCATCCAAAATGCTCTGGGAATATTTGGAGAATGAGAACAGGGTTGGCATCTAAACCGTAGCGAGGCAAGGATTTATGTTATTCCAGGTTTTTCTTAAACAAATTCCTTTTGAAGCTTTAGACAAAGATGAAAGGCGGCCATGATTTACAATATTGTAGGGTCTTTTCTCACTTTTTGACACAAGTCTCAGCAGGCCAGCTGGTGAATCGGAGACGTTCTATGAAAAGCTTGCGTGTCCTTTGAACCTATACCATGTATAGACTCCCAGTGGATAAAGTTATTGTAATAAAATATTGTACTTTTTTTCCAAAGAAAAAAACACTTC

Fln Alignment:

CL4175Contig1___STTLCTNLQSSKPITSQQQQP---PFDGLPLIYXXXXXXXXXXXSGVCEAAFLRDSTKSNSQDVGLGDLFHDFLIFPPNGLECSQPLENIDVSRIAPQYDPNQSEWQTWADKLASSDDASCAGFWKEPADVNNNPKTGLNTINQTSTVSTTNVGSHXXXXXXXXXXQIVAPTVGXXXXXXXXXXXXXTSSKTRLKWTPELHERFVEAVNQLGGAERATPKGVLKFMDSEGLTIYHVKSHLQKYRIAKYIPK--------HADGIEDKTRNSFDTSASFDLKTGMQITEALRLQMDVQKKXXXXXXXXXXXXXXXXEYGKRLQKMLEEQQQTARKIECDPKAADDQSKSDAVGG
B8LKH4_______________SSTFCTDLHFSPSSISQHHPPGILPFLPHPSECSLRASVMPPSQSAFSQSLFSGDYMKQSYGDTHTGDPLQDIFNFPDVASECSQRNQGATSSGIVGQGHTEPDEWQDWPEQLPSDDDSLVAN-WTDLLVVESGEDPGLNTIYPAAKLPTTGSISQLHQG-------FCAPAGGNQFASSSTSSGTGTSNKQRLRWTPELHERFIEAVKKLHGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRIAKYMPDQGEGKTSCYAAGKEDKKRNSSDDLPTLDLKAGMQITEALRLQMEMQKKLHEQLEVQRALQLKIEEHGKYLQKMFEEQQKTDSSFKSQSLSAPRSSNPFAAAG

SSRs (tot: 1)

Start position	End position	Sequence	Length
1609	1621	GCT GCT GCT GCT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain