SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46212

Length: 987 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene46212 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial substrate carrier family protein [Arabidopsis thaliana] gb\|AAK92815.1\| putative mitochondrial carrier protein [Arabidopsis thaliana] gb\|AAL61924.1\| putative mitochondrial carrier protein [Arabidopsis thaliana] gb\|AAM14152.1\| putative mitocho	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Sma3	Putative mitochondrial carrier protein	-	-	5.971e-11	-

Source	Gene names
Sma3	170F8.1; At1g72820; At5g15640; At5g15640/F14F8_20; At5g26200; BA8; CHLREDRAFT_96857; F14F8_20; F3N23.2; F9D12.12; GSVIVT00032249001; LOC_Os03g07890; LOC_Os03g54760; LOC_Os10g25830; MITC6; OJ1123_B08.12; OSJNBb0058B20.12; OSJNBb0081K01.22; Os01g0329400; Os

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	hydroxymethylglutaryl-CoA reductase (NADPH) activity	GO:0004420	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	coenzyme A metabolic process	GO:0015936	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G15640.1	Mitochondrial substrate carrier family protein chr5:5087590-5089677 FORWARD LENGTH=323	53%
RefSeq	Arabidopsis thaliana	NP_568317.1	Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002312303.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ACT4

Fln msg: your sequence is shorter than subject: 302 - 318

Fln protein: DKTRFHVIGAILFSVQSALLHPIAVVKTRIQVSGAGFAQTNGLLVFRNILRNDGIPGLFRGYGTSAIGSLPGRVVCLTSLEIAKDSVLKSTENMDIPEATRTTIANAAAGMVSSLISGVYFVPLDVVCQRLMVQGLPGMTKFNGAVDAAHKIFKTEGIRGLYRGFGMTVVSYSPASAVWWGAYGFAQHMIWRGLGYGEDIEKRSPSHGEIVIVQATAGTLAGAASSVLTTPLDTIKTRLQVMDNYGEGRPSVMKTARQLLKEDGWKGFYRGFGPRFLNMSLWGTSMIVTYELIKRLSVKDL*

Protein Length: 303

Fln nts: GACAAGACAAGATTTCATGTTATTGGAGCAATTCTTTTTTCTGTTCAGTCCGCGTTGCTGCATCCTATAGCTGTTGTAAAGACAAGAATTCAGGTTTCTGGAGCTGGGTTTGCTCAAACAAATGGTCTTCTTGTTTTCAGAAATATATTGAGGAATGATGGAATTCCTGGTCTTTTTCGAGGATATGGTACATCTGCAATAGGATCTTTACCTGGCAGAGTGGTTTGTCTAACTAGCTTGGAGATTGCAAAGGACTCTGTTTTGAAATCGACAGAAAACATGGACATACCAGAAGCAACACGTACAACAATAGCGAATGCTGCTGCGGGGATGGTTTCATCTCTTATTTCTGGTGTTTACTTTGTGCCACTTGATGTGGTATGCCAGAGGCTAATGGTTCAGGGCCTTCCTGGAATGACAAAATTCAATGGTGCAGTAGATGCTGCACATAAAATATTTAAGACAGAGGGCATTCGTGGTCTCTATAGAGGTTTTGGAATGACAGTGGTATCTTATTCTCCAGCATCAGCAGTTTGGTGGGGAGCATATGGCTTTGCCCAGCATATGATTTGGAGGGGCTTGGGCTATGGAGAGGATATAGAAAAAAGATCACCATCACATGGAGAAATTGTTATAGTGCAAGCTACAGCAGGAACTTTGGCAGGTGCAGCTTCATCTGTTTTGACCACTCCATTAGATACCATAAAAACACGTCTTCAGGTTATGGATAATTATGGTGAAGGCAGGCCATCCGTCATGAAGACGGCGAGGCAACTACTGAAAGAAGATGGGTGGAAAGGATTTTACAGAGGTTTTGGACCACGCTTCTTGAACATGTCCTTGTGGGGAACTTCCATGATTGTAACTTACGAGCTAATAAAAAGATTATCAGTGAAAGATTTGTGA___TTCTTCTGGAGCTCTGAATTGGTCAGAGTACAGTCATTTGAGAGCTTTTTCTTATGAAGAGGAGTACGTCACATGTTCGTA

Fln Alignment:

CL4009Contig1___DKTRFHVIGAILFSVQSALLHPIAVVKTRIQVSGAGFAQTNGLLVFRNILRNDGIPGLFRGYGTSAIGSLPGRVVCLTSLEIAKDSVLKSTENMDIPEATRTTIANAAAGMVSSLISGVYFVPLDVVCQRLMVQGLPGMTKFNGAVDAAHKIFKTEGIRGLYRGFGMTVVSYSPASAVWWGAYGFAQHMIWRGLGYGEDIEKRSPSHGEIVIXXXXXXXXXXXXXXXLTTPLDTIKTRLQVMDNYGEGRPSVMKTARQLLKEDGWKGFYRGFGPRFLNMSLWGTSMIVTYELIKRLSVK
D5ACT4_______________DKAKFYAIGAGLFTGVTVALYPISVVKTRLQVIQRNAENPTAISIFRNILKADGISGLYRGFGTVVIGAVPGRVIFLTTLETTKIGALRITEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGLDAARKILMTDGVRGLYRGFGMSVMTYSPSSAFWWASYGFSQRIIWRSLGYSTENSSLTPSQGEIILVQAGGGIFAGAIASCTTTPLDTIKTRLQVMDI--ESAPSIKQTIERLINEDGWKGLYRGIGPRFISMSAWGTSMILAYEYLKRLCAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain