SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46075

Length: 1145 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene46075

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Methylenetetrahydrofolate dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T0V4_RICCO	-	-	0.0	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Tetrahydrofolate dehydrogenase/cyclohydrolase	-	-	8.213e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Methylenetetrahydrofolate dehydrogenase (NADP(+)).	EC:1.5.1.5	-	6.934e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	One carbon pool by folate	00670		6.934e-18	%
Sma3	Carbon fixation pathways in prokaryotes	00720		6.934e-18	%
Sma3	Metabolic pathways	01100		6.934e-18	%
Sma3	Methenyltetrahydrofolate cyclohydrolase.	EC:3.5.4.9	-	4.619e-22	-

Source	KEGGs	Term	e value	Identity
Sma3	One carbon pool by folate	00670	4.619e-22	%
Sma3	Carbon fixation pathways in prokaryotes	00720	4.619e-22	%
Sma3	Metabolic pathways	01100	4.619e-22	%

Source	Gene names
Sma3	AT2G38660; AT4g00600; AT4g00620; At2g38660; At3g12290; At4g00600; At4g00620; At4g00620/F6N23.26; CHLREDRAFT_114203; CHLREDRAFT_194856; CHLREDRAFT_206121; F28J15.8; F6N23.26; F6N23.28; FOLD; GSVIVT00004384001; GSVIVT00010817001; GSVIVT00026785001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	methenyltetrahydrofolate cyclohydrolase activity	GO:0004477	Molecular Function	-
Sma3	methylenetetrahydrofolate dehydrogenase (NADP+) activity	GO:0004488	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	folic acid-containing compound biosynthetic process	GO:0009396	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Tetrahydrofolate dehydrogenase/cyclohydrolase	IPR000672	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G12290.1	Amino acid dehydrogenase family protein chr3:3919591-3921326 FORWARD LENGTH=299	72%
RefSeq	Arabidopsis thaliana	NP_187837.1	amino acid dehydrogenase family protein [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002302571.1	tetrahydrofolate dehydrogenase/cyclohydrolase [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZF4

Fln msg: your sequence is shorter than subject: 245 - 278

Fln protein: MAQVIDGRAIAQSILKEIAHDVSYLSNKYAKVPGLAVVIVGERKDSQTYVRMKRKACAEVGIKSIDVDLPGDAPEEKVLDAVLHLNANLQVHGISVQLPLPPHINEEKILSAISIEKDVDGFHPINIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISNKRAVVVGRSNIVGLPVALMLIKLDATVTMVHSKTSDPKSIISGRCCFWGMQGCCWMDHSSTRWSWTNDYCNASQKYCRWCEASL*

Protein Length: 246

Fln nts: GGATAAGAGTGGTGGAAGAGAAAGGAGAAATCA_-_ATGGCGCAAGTTATAGACGGCAGAGCCATTGCGCAGTCTATTCTCAAGGAGATCGCCCACGATGTCTCTTATCTTTCCAACAAATATGCCAAGGTTCCTGGTCTGGCTGTTGTCATTGTGGGTGAGAGGAAAGACTCCCAGACTTATGTACGTATGAAGAGGAAAGCATGTGCAGAAGTTGGCATAAAGTCTATTGATGTAGACTTACCAGGAGATGCACCAGAAGAGAAAGTCCTTGATGCAGTTCTTCATCTGAATGCCAATCTTCAAGTACATGGCATCTCAGTCCAGCTTCCACTGCCACCACACATCAATGAAGAGAAGATACTGAGTGCAATAAGCATAGAAAAGGATGTAGATGGGTTTCATCCTATCAACATTGGCAAACTTGCAATGAAGGGAAGGGAACCTCTATTTGTTCCATGTACACCAAAGGGGTGCATAGAACTCTTACAAAGGAGTGGGGTCTCCATATCAAATAAAAGAGCAGTTGTGGTTGGAAGGAGTAACATAGTAGGATTGCCAGTTGCGTTGATGCTAATCAAATTAGATGCAACTGTGACAATGGTGCATTCTAAAACTTCAGATCCAAAGAGTATAATTAGTGGGAGATGTTGCTTTTGGGGAATGCAAGGATGTTGCTGGATGGATCACTCCAGTACCAGGTGGAGTTGGACCAATGACTATTGCAATGCTTCTCAGAAATACTGCAGATGGTGCGAAGCGAGCCTGTGA___AGAAGCTTCCAAAGTTGAATGACGAAATACCATGATGATATTTTCATTAAAAAGAACAGCTGCACACCAAAATTCTTGGTCTTATGACACTCCTACCTTTCAGAGAAGCGTTTTCACAATAGTTTAGTTGATCTCATGGTAATTTGAGATCATTTTAAAATTTACAGCTATTGTATTGATTTTGTTCATTAATTATCAAAACTTTAAGGTCACTTATAATAAACATGTTTCCTGGGACCTCATTCAAAATTTTCCTTTTACTTACGTGAGAAATGATTTACTGTGGATAGCTTCCTAAAGGATTCAGTCGAGACTTAGTCTCAAAGTTTTTAGTGGTCTTAGTTAAACTAAATTATAATTGCAATTTACACTTTCAT

Fln Alignment:

CL1733Contig2___MAQVIDGRAIAQSILKEIAHDVSYLSNKYAKVPGLAVVIVGERKDSQTYVRMKRKACAEVGIKSIDVDLPGDAPEEKVLDAVLHLNANLQVHGISVQLPLPPHINEEKILSAISIEKDVDGFHPINIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISNKRAVVVGRSNIVGLPVALMLIKLDATVTMVHSKTSDPKSIIS---------GRC------------------------------------CFWGMQGCCWMDHSSTRWSWTNDYCNAS
A9NZF4_______________MAQIIDGKAIAQSIHNEVAQDVSYLSQKYGKVPGLAVVIVGVKKDSQTYVRMKRKACAEVGIKSINVDLPGDVSEENLLDAVLDLNADPEVHGILVQLPLPPHINEEKILSAISIEKDVDGFHPLNIGKLAMKGREPLFVPCTPKGCIELLQRSGVSISNKRAVVVGRSNIVGLPVALLLIKLDATVTMVHSKTPDPKSIISEADIIIAAAGQANMIKADWIKPGAAVIDVGTNAVDDPSRKLGYRLVGDVAWGMQGGCWMDHSSTRWSWTNDYCNAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain