SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene46002

Length: 2048 nt

UniGene Fasta

>sp_v3.0_unigene46002
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAAGAGAAATATGGTGTGAGGACCGTTCACCAAATGAGCGAGTTCACGATGGAATTGAAAGAAGGGCGGCCTAGCGTAAAGGGTTTGGTGTAGTGGGTGCAATTGGACTATTGTGCCGCTGCAGTTTGCTTGCGTACCTCTCCTGTAGCTGGTAATTAATCTTTGGTTATCTAGCACTTCCTCGGCTCGGTACACGGATAAATATATGACCTTTGTTATTCTGTCGAGCACCTGCGGACCGGGGTAGTAGCATACATATGTAGGTTGAGAGCGAGAGGATAGCAAAATCCTTACCTATAGCCCCCGCAAGTAGTGGAAGTAGCACTGGCAGTCAATCTAGAAGCATAAGTAGTAACGGAAGAAGCACCACTAGCATCAAAGCTAGAAGCAGAGTACTCCGTTTTCTACTTTTCCTGGAAAGGGCCATTGAATGTATGGTTGGAATGGAGGGGGCACATCAGACTAACGAGGACGAGAGCGAATCAGAATTCATCGACGAGGACGATGTGATTGATGAAATTTCCATAGACGAGGAAGATCTTCCAGATGCTGATGTGGAAGGCGAAGATGTGCAAGAAGACAACAGAAGAAGTGAGCCAGATGAGAACTCAAGTAGTTTGGACGATGCTATACACACTTTCGAAGGTCATGAAGATACTTTGTTTGCTGTAGCATGCAGTCCAGTTGATGCAACATGGGTTGCATCAGGTGGTGGAGACGACAAAGCTTTTATGTGGAGAATAGGCCATGCAACGCCATTTTTTGAGCTGAAAGGGCATACCGATTCTGTTGTAGCCTTGTCTTTCAGTAATGATGGGATTTTACTTGCATCTGGTGGTTTGGATGGAGTAGTTCGCATCTGGGATGCTTCTACGGGAAATCTCATACATGTACTAGATGGCCCTGGAGGGGGGATTGAGTGGGTCAGATGGCATCCAAAAGGGCATTTAGTCTTGGCAGGATCAGAGGATTACAGTACTTGGATGTGGAATGCTGATCTTGGAAAGTGCCTTTCAGTATATACTGGTCATTGCGAATCTGTAACATGTGGCGATTTTACACCGGATGGAAAGACTATCTGTACCGGCTCTGCAGATGGTTCCTTGCGGGTATGGAATCCACAAACACAAGAAAGTAAACTCACTGTAAAAGGGTATCCATACCACACAGAGGGTCTAACATGCTTGAGTATTAGTTCAGATTCCACATTGGTTGTTAGTGGCTCCACAGATGGCAGTGTTCACGTGGTTAACATAAAAAATGGAAAGGTGGTTGCTTCCTTAGTTGGTCATTCTGGATCAATAGAATGTGTCAGGTTTTCACCTAGCTTGACTTGGGTTGCAACCGGTGGGATGGATAAAAAACTAATGATTTGGGAATTACAAAGCTCATCACTGCGATGCACTTGTCAGCATGAGGAAGGCGTGATGAGGTTATCATGGTCAGTTTCATCCCAGCACATAATAACTGCTTCCCTTGATGGAATTGTCCGCCTTTGGGATAGTCGTTCAGGGGTTTGTGAAAGAGTTTTCGAGGGTCACAATGATTCAATTCAGGATATGGTGGTGACAGTGGATCAACGGTTTATCCTTACAGGATCAGATGACACGACTGCGAAAGTTTTTGAAATTGGGGCATTTTGATTTTATATACTGTTTCATTCAAAATTATTGCCATGTTTGATTCTGAGTCACAGCAGAAGATTAGAGGAGCTGAGACAGGTAATAAATTTCTTTCCACAAGATAACATAGGTAACTATCGACTGAAGTTAACTGGGAGGCAGAAGCTAACTCTGTTGGTTTCTTTTTCTGTAAGGTTCTTTTAACAATGATAATGTTGTATCTACAATATTTTTGTAATTATCTTTTAGCAGTTGACATTAGTATTTGAGTAAAATTTATAAGGTTCATGTTCTCTTATCAAAATGATTATATTTTTTTCGTTATTTTTGATAAGTGGATCTTCTAATTACAATTTCTGCTCTAATTTTCCTGTTTTTCAAGTA

Ace file of the UniGene sp_v3.0_unigene46002

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana] gb\|AAL86002.1\| unknown protein [Arabidopsis thaliana] gb\|AAN71963.1\| unknown protein [Arabidopsis thaliana] gb\|AEE35239.1\| transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR019782	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G71840.1	transducin family protein / WD-40 repeat family protein chr1:27022424-27024380 FORWARD LENGTH=407	58%
RefSeq	Arabidopsis thaliana	NP_177329.2	transducin/WD-40 repeat-containing protein [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002327217.1	predicted protein, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU3

Fln msg:

Fln protein: MVGMEGAHQTNEDESESEFIDEDDVIDEISIDEEDLPDADVEGEDVQEDNRRSEPDENSSSLDDAIHTFEGHEDTLFAVACSPVDATWVASGGGDDKAFMWRIGHATPFFELKGHTDSVVALSFSNDGILLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGHLVLAGSEDYSTWMWNADLGKCLSVYTGHCESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGYPYHTEGLTCLSISSDSTLVVSGSTDGSVHVVNIKNGKVVASLVGHSGSIECVRFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSWSVSSQHIITASLDGIVRLWDSRSGVCERVFEGHNDSIQDMVVTVDQRFILTGSDDTTAKVFEIGAF*

Protein Length: 404

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAAGAGAAATATGGTGTGAGGACCGTTCACCAAATGAGCGAGTTCACGATGGAATTGAAAGAAGGGCGGCCTAGCGTAAAGGGTTTGGTGTAGTGGGTGCAATTGGACTATTGTGCCGCTGCAGTTTGCTTGCGTACCTCTCCTGTAGCTGGTAATTAATCTTTGGTTATCTAGCACTTCCTCGGCTCGGTACACGGATAAATATATGACCTTTGTTATTCTGTCGAGCACCTGCGGACCGGGGTAGTAGCATACATATGTAGGTTGAGAGCGAGAGGATAGCAAAATCCTTACCTATAGCCCCCGCAAGTAGTGGAAGTAGCACTGGCAGTCAATCTAGAAGCATAAGTAGTAACGGAAGAAGCACCACTAGCATCAAAGCTAGAAGCAGAGTACTCCGTTTTCTACTTTTCCTGGAAAGGGCCATTGAATGT_-_ATGGTTGGAATGGAGGGGGCACATCAGACTAACGAGGACGAGAGCGAATCAGAATTCATCGACGAGGACGATGTGATTGATGAAATTTCCATAGACGAGGAAGATCTTCCAGATGCTGATGTGGAAGGCGAAGATGTGCAAGAAGACAACAGAAGAAGTGAGCCAGATGAGAACTCAAGTAGTTTGGACGATGCTATACACACTTTCGAAGGTCATGAAGATACTTTGTTTGCTGTAGCATGCAGTCCAGTTGATGCAACATGGGTTGCATCAGGTGGTGGAGACGACAAAGCTTTTATGTGGAGAATAGGCCATGCAACGCCATTTTTTGAGCTGAAAGGGCATACCGATTCTGTTGTAGCCTTGTCTTTCAGTAATGATGGGATTTTACTTGCATCTGGTGGTTTGGATGGAGTAGTTCGCATCTGGGATGCTTCTACGGGAAATCTCATACATGTACTAGATGGCCCTGGAGGGGGGATTGAGTGGGTCAGATGGCATCCAAAAGGGCATTTAGTCTTGGCAGGATCAGAGGATTACAGTACTTGGATGTGGAATGCTGATCTTGGAAAGTGCCTTTCAGTATATACTGGTCATTGCGAATCTGTAACATGTGGCGATTTTACACCGGATGGAAAGACTATCTGTACCGGCTCTGCAGATGGTTCCTTGCGGGTATGGAATCCACAAACACAAGAAAGTAAACTCACTGTAAAAGGGTATCCATACCACACAGAGGGTCTAACATGCTTGAGTATTAGTTCAGATTCCACATTGGTTGTTAGTGGCTCCACAGATGGCAGTGTTCACGTGGTTAACATAAAAAATGGAAAGGTGGTTGCTTCCTTAGTTGGTCATTCTGGATCAATAGAATGTGTCAGGTTTTCACCTAGCTTGACTTGGGTTGCAACCGGTGGGATGGATAAAAAACTAATGATTTGGGAATTACAAAGCTCATCACTGCGATGCACTTGTCAGCATGAGGAAGGCGTGATGAGGTTATCATGGTCAGTTTCATCCCAGCACATAATAACTGCTTCCCTTGATGGAATTGTCCGCCTTTGGGATAGTCGTTCAGGGGTTTGTGAAAGAGTTTTCGAGGGTCACAATGATTCAATTCAGGATATGGTGGTGACAGTGGATCAACGGTTTATCCTTACAGGATCAGATGACACGACTGCGAAAGTTTTTGAAATTGGGGCATTTTGA___TTTTATATACTGTTTCATTCAAAATTATTGCCATGTTTGATTCTGAGTCACAGCAGAAGATTAGAGGAGCTGAGACAGGTAATAAATTTCTTTCCACAAGATAACATAGGTAACTATCGACTGAAGTTAACTGGGAGGCAGAAGCTAACTCTGTTGGTTTCTTTTTCTGTAAGGTTCTTTTAACAATGATAATGTTGTATCTACAATATTTTTGTAATTATCTTTTAGCAGTTGACATTAGTATTTGAGTAAAATTTATAAGGTTCATGTTCTCTTATCAAAATGATTATATTTTTTTCGTTATTTTTGATAAGTGGATCTTCTAATTACAATTTCTGCTCTAATTTTCCTGTTTTTCAAGTA

Fln Alignment:

CL565Contig1___MEGAHQTNXXXXXXXXXXXXXXXXXXXXXXXXLPDADVEGEDVQEDNRRSEPDENSSSLDDAIHTFEGHEDTLFAVACSPVDATWVASGGGDDKAFMWRIGHATPFFELKGHTDSVVALSFSNDGILLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGHLVLAGSEDYSTWMWNADLGKCLSVYTGHCESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGYPYHTEGLTCLSISSDSTLVVSGSTDGSVHVVNIKNGKVVASLVGHSGSIECVRFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSWSVSSQHIITASLDGIVRLWDSRSGVCERVFEGHNDSIQDMVVTVDQRFILTGSDDTTAKVFEIGAF
B8LPU3_______________MPDEHQTNEDESESVFIDEDDVLDEISIDEEDLPDADVEGEDVREDNGESEPDETSSSLDDAIHTFEGHEDTLFAVACSPVDATWVASGGGDDKAFMWRIGHTTPFFELKGHTDSVVALSFSNDGLLLASGGLDGVVRIWDASTGNLIHVLDGPGGGIEWVRWHPKGQLVLAGSEDYTTWMWNADLGKCLSVYTGHSESVTCGDFTPDGKTICTGSADGSLRVWNPQTQESKLTVKGHPYHTEGLTCLNISSDSTLVVSGSTEGSVHVVNIKNGKVVGSLVGHSGSIECVGFSPSLTWVATGGMDKKLMIWELQSSSLRCTCQHEEGVMRLSWSSSSRHIISASLDGIVRLWDSRSGVCERVFQGHSDSIQDMAITVDQRFILTGSDDKTAKVFEIEAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain