SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45942

Length: 1389 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene45942 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] ref\|NP_001119465.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97324.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana] gb\|AED97328.1\| E3 SUMO-protein ligase SIZ1 [Arabidopsis thaliana]	-	-	5.0e-08	41%
FL-Next	sp=E3 SUMO-protein ligase SIZ1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	43%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6L4L4

Fln msg: Separated hits, possible frame ERROR between 300 and 380, Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 43 aas, your sequence is shorter than subject: 136 - 875

Fln protein: IH*FARLLI*ILVPKECRNWNM*ILLPNQNNNVLLPVHVGSVLLHWQCPMCKENYSVDSIINFMKNYSKDVTEVEVKPDASWHPKVEGYASLREHWHQPxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKIGIKRN*

Protein Length: 137

Fln nts: ATTCATTGATTTGCAAGACTCCTGATTTAAATTCTAGTCCCCAAAGAGTGCCGGAATTGGAATATGTGAATTCTCTTACCAAATCAAAACAACAACGTCCTGCTTCCGGTTCACGTTGGCTCTGTTCTTCTTCATTGGCAGTGTCCTATGTGCAAGGAGAATTATTCAGTGGATAGCATCATTAATTTTATGAAAAACTACTCTAAGGACGTAACTGAAGTTGAGGTGAAACCAGATGCTTCTTGGCATCCAAAGGTTGAAGGTTATGCCAGTCTCCGTGAGCATTGGCATCAGCCAGAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTTTAAAAATTGGAATAAAGAGGAATTGAGATGGTATCCAAACCTCGAAGGTTATGCCAGGCTCCATGAGCATTGGCATCGGCCAGATAGATCAATCATTATTTCAATTGGAAAAATTACACATCAACAGGGAAACTTGAACCAGGTTAAATGTGAGGGTATATTTGAAAGTCAGTTGCCTTTAAAAATTGGAATAAAGAGGAATTGAGATAGTTATTTGGGATTAGGTGGTGCTATCTTATCATCTACTGCAAATACTATGCCATGGATGGAAAAAGGGGAATATAAAAATTGTGCGAGCCATCAGCTACAGTGCGACTGATACAAATGGAGATGATGAAGATCCAAGTATTAATCAAGAAGGAAGTGAGGACCTTGTCAGGGAATATAAAAACTGTGCCAGCCATCAACTACAGTGCAAATGATACAAATGGAGATGATGAAGATCCAAGTATCAATCAGGAAGAAAGTGGAAGTGAGAACCTCGACTTTTCAACAAATAATGATGCCAGGTTTTGACTCTTCATTCTTGAGACGTAATCAGACTTTACAGAGAATTTCCAAGCATGTTTGTTCTGAACTCCAAAAGGATTCTGAACTAATAGTTCTAAGTGATTCAGAGGAAGAGAATGCGAATGATGTAAACATTGGTTAATCTATTGTTTCAGTTTTTGTATTTCGGATATTTTGTGTCAAGGTGTAGAGTACCGTTGAATTCCTATGAAGGTTTGCAGGAGGAATCACAGTTTGATTGCATTGGTATTACCTAAACCTTCATTCATTCGCAGTTATTGGATCCTTTTCTGAAGTGATTTTTACTCCAGCATAGCATCAACGCTCCACTTACGTCATCAATTTGTCAGATCAATTAGGCCTCGATTTTAAGTTTCTGTGGATTCAGATTCTAATTAGGTCGCAGCATTCAGCATCAACTCTGTCGCTGGTCTTGCATGCCCGTTGAGGATTATGAGACCAGGATTTTATTTTATGATTTACGTAGAAAAGTTACCCT

Fln Alignment:

CL96Contig4___WQCPMCKENYSVDSII---------NFMKNYSKDVTEVEVKPDASWHPKVEGYASLRE--HWHQPDxxxxxxxxxxxxxxxxxxxxxxxxxxxLKIGIKRN*DGI
Q6L4L4_______________WQCPICLKNYSLESLMIDPYFNRITSLLRNCNEDVNEVDVKPDGSW--RVKGDAASRELSQWHMPDxxxxxxxxxxxxxxxxxxxxxxxxxxxLKIGIKRNPNGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain