SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45921

Length: 1312 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene45921 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-binding protein n=1 Tax=Lotus japonicus RepID=Q9SCA1_LOTJA	-	-	3.0e-38	54%
FL-Next	sp=Calmodulin-like protein 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	39%
Sma3	Calmodulin, putative	-	-	3.566e-09	-

Source	Gene names
Sma3	At1g05990; At2g43290; At3g07490; At3g59440; At4g03290; At4g12860; CML17; CML2; CML22; CML28; CML3; CML4; CML5; CML6; CML7; F14B2.33; F21O3.20; F25L23.300; F4C21.22; GSVIVT00001946001; GSVIVT00013306001; H0425E08.6; H0522A01.1; H9-7; LOC_Os02g39380; LOC_Os

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Parvalbumin	IPR008080	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G07490.1	AGD11 ARF-GAP domain 11 chr3:2391189-2391650 FORWARD LENGTH=153	53%
RefSeq	Arabidopsis thaliana	NP_187405.1	calmodulin-like protein 3 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002301768.1	predicted protein, partial [Populus trichocarpa]	56%

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain