SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45816

Length: 443 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene45816
GTTTTAATGGAGGAGGTGACGGGAATGGAGCATTTGTTGTTGCAGAACCGTCATCGGATACCAGAGTTTTGCCCGTTGAGCTCCACAAAGAGGCAACGGACTCGTATTTGTCTTACGCGTTGTCGGTTTTAGTTGGCCGTGCTCTGCCCGATGTTCGGGACGGACTAAAGCCTGTTCATCGTCGACTTCTATTTGCAATGGATGAATTGGGTCTTTCTTCAAAGAAACCCTATAAGAAATGTGCAAGAGTTGTTGGTGAGGTTCTAGGTAAGTTTCATCCCCATGGAGATAGTGCAGTTTATGCTGCGTTGGTGCGAATGGCACAGGATTTTTCATTGCGATCCCCTCTTATCCGAGGGCATGGAAATTTTGGTTCAGTTGATGCTGATCCTCCAGCTGCCATGCGATATACAGAATGCAGACTGGAAGAACTCTCTGAGGCA

Ace file of the UniGene sp_v3.0_unigene45816 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Vitis vinifera RepID=UPI0001985B62	-	-	0.0	79%
FL-Next	sp=Probable DNA gyrase subunit A, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	79%
Sma3	Probable DNA gyrase subunit A, chloroplastic/mitochondrial	-	-	7.399e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	8.576e-15	-

Source	Gene names
Sma3	At3g10690; CHLREDRAFT_115934; DNA_TopoIV; F13M14.2; GSVIVT00033901001; GYRA; LOC_Os03g59750; MICPUCDRAFT_52348; MICPUN_88167; OSJNBa0024F18.37; OSJNBb0033J23.17; OSTLU_28121; Os03g0812000; OsI_14033; OsJ_13077; Ot17g01710; PHATR_33633; PHYPADRAFT_135715;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10690.1	GYRA DNA GYRASE A chr3:3339612-3346243 REVERSE LENGTH=950	79%
RefSeq	Arabidopsis thaliana	NP_187680.2	DNA gyrase subunit A [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002315402.1	predicted protein [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CAF6

Fln msg: Distance to subject end: 724 aas, your sequence is shorter than subject: 147 - 950

Fln protein: FNGGGDGNGAFVVAEPSSDTRVLPVELHKEATDSYLSYALSVLVGRALPDVRDGLKPVHRRLLFAMDELGLSSKKPYKKCARVVGEVLGKFHPHGDSAVYAALVRMAQDFSLRSPLIRGHGNFGSVDADPPAAMRYTECRLEELSEA

Protein Length: 148

Fln nts: GTTTTAATGGAGGAGGTGACGGGAATGGAGCATTTGTTGTTGCAGAACCGTCATCGGATACCAGAGTTTTGCCCGTTGAGCTCCACAAAGAGGCAACGGACTCGTATTTGTCTTACGCGTTGTCGGTTTTAGTTGGCCGTGCTCTGCCCGATGTTCGGGACGGACTAAAGCCTGTTCATCGTCGACTTCTATTTGCAATGGATGAATTGGGTCTTTCTTCAAAGAAACCCTATAAGAAATGTGCAAGAGTTGTTGGTGAGGTTCTAGGTAAGTTTCATCCCCATGGAGATAGTGCAGTTTATGCTGCGTTGGTGCGAATGGCACAGGATTTTTCATTGCGATCCCCTCTTATCCGAGGGCATGGAAATTTTGGTTCAGTTGATGCTGATCCTCCAGCTGCCATGCGATATACAGAATGCAGACTGGAAGAACTCTCTGAGGCA

Fln Alignment:

CL22062Contig1___GDGNGAFVVAEPSSDTRVLPVELHKEATDSYLSYALSVLVGRALPDVRDGLKPVHRRLLFAMDELGLSSKKPYKKCARVVGEVLGKFHPHGDSAVYAALVRMAQDFSLRSPLIRGHGNFGSVDADPPAAMRYTECRLEELSEA
Q9CAF6_______________GANNGGLVVS--GDESRIVPFELHKEATESYMSYALSVLLGRALPDVRDGLKPVHRRILFAMHELGMSSKKPYKKCARVVGEVLGKFHPHGDTAVYDSLVRMAQSFSLRCPLIQGHGNFGSIDADPPAAMRYTECRLDPLAEA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain