SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45677

Length: 170 nt

UniGene Fasta

>sp_v3.0_unigene45677
TGCATAGGATTTAACCTAATAGAGGCTGTCTTATGCCATATTTGTAGAAAAGAAAGGCCAGGGGCTGTCTTGGTATTCATGACAGGATGGGATGATATAAATGCTTTGAAGGATCAGCTCAAGGCACATCCTCTGTTGGGAGATCCAAACAGAGTTCTGTTGCTTACCTG

Ace file of the UniGene sp_v3.0_unigene45677

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative helicase [Oryza sativa Japonica Group]	-	-	9.0e-24	94%
FL-Next	tr=Uncharacterized protein; Zea mays (Maize).	-	-	0.0	94%
Sma3	ATP-dependent RNA helicase, putative	-	-	4.937e-09	-

Source	Gene names
Sma3	At2g01130; F11I4_16; GSVIVT00009138001; GSVIVT00017756001; GSVIVT00030427001; LOC_Os03g53760; OSJNBa0069E14.16; Os01g0118100; Os03g0748800; OsI_00149; OsI_13511; OsJ_00159; P0494A10.16; POPTRDRAFT_420510; POPTRDRAFT_822106; POPTRDRAFT_824579; POPTRDRAFT_8

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G04895.1	DEA(D/H)-box RNA helicase family protein chr5:1428796-1434516 FORWARD LENGTH=1161	1.0e-29	90%
RefSeq	Arabidopsis thaliana	NP_680142.2	DEA(D/H)-box RNA helicase family protein [Arabidopsis thaliana]	1.0e-29	90%
RefSeq	Populus trichocarpa	XP_002310975.1	predicted protein, partial [Populus trichocarpa]	1.0e-30	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B7ZX83

Fln msg: Distance to subject end: 134 aas, your sequence is shorter than subject: 56 - 296

Fln protein: CIGFNLIEAVLCHICRKERPGAVLVFMTGWDDINALKDQLKAHPLLGDPNRVLLLT

Protein Length: 57

Fln nts: TGCATAGGATTTAACCTAATAGAGGCTGTCTTATGCCATATTTGTAGAAAAGAAAGGCCAGGGGCTGTCTTGGTATTCATGACAGGATGGGATGATATAAATGCTTTGAAGGATCAGCTCAAGGCACATCCTCTGTTGGGAGATCCAAACAGAGTTCTGTTGCTTACCTG

Fln Alignment:

CL20269Contig1___CIGFNLIEAVLCHICRKERPGAVLVFMTGWDDINALKDQLKAHPLLGDPNRVLLL
B7ZX83_______________CIGFNLIEAVLCHICRKERPGAVLVFMTGWDDISCLKDQLKAHPLLGDPNRVFLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain