SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45631

Length: 1244 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene45631 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative polyubiquitin [Arabidopsis thaliana]	-	-	100%
FL-Next	tr=Putative polyubiquitin; Picea abies (Norway spruce) (Picea excelsa).	-	-	100%
Sma3	Putative polyubiquitin	-	-	-

Source	Gene names
Sma3	UBQ13;

Source	GOs	Term	Type	e value	Identity
Sma3	protein modification process	GO:0006464	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G03240.1	UBQ3 polyubiquitin 3 chr5:771976-772896 REVERSE LENGTH=306	100%
RefSeq	Arabidopsis thaliana	NP_568112.2	polyubiquitin 3 [Arabidopsis thaliana]	100%
RefSeq	Populus trichocarpa	XP_002305607.1	predicted protein [Populus trichocarpa]	100%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q7FPA4

Fln msg:

Fln protein: MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGSF*

Protein Length: 232

Fln nts: CTTCCGATCTTGATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGATCTTTTCTCTTGCGTTGTATCATCAGTGCGATATTCTCAGAGAGCTTTTCATTCAAAGGTATATTCGTTAGTCATATTTCAATTTCAAG_-_ATGCAGATCTTTGTCAAGACTCTTACTGGTAAGACCATCACTCTAGAGGTCGAGAGCTCTGACACCATTGACAATGTTAAAGCTAAGATCCAGGACAAGGAAGGGATTCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGAAAGCAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTACCCTCCACCTTGTTCTCCGTTTGAGGGGTGGCATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTCGGACACCATTGACAACGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCCCCTGACCAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTACAATATTCAGAAGGAATCGACCCTGCACCTTGTGCTTCGTCTGAGAGGAGGCATGCAGATTTTTGTGAAAACTCTTACGGGGAAAACCATTACTTTGGAGGTGGAGAGCTCAGATACGATTGATAATGTGAAGGCTAAGATTCAGGACAAGGAGGGTATCCCTCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACCCTGGCTGATTATAACATCCAGAAAGAGTCGACTCTGCACCTGGTGCTCCGACTTCGTGGTGGTAGTTTTTAA___TTTAAAGGTCTTCTTGGAATAGCTTCGCAGGGTCTCCGTAAAAGATGTTTCTGTATGCGTTTGTTAGTTTTTGATTTTCTGTTGTGGGATCCGTGATGTTTTTTGTCTGTGCACAGTAGAACGAAACCAACGTTGATGTCCTGGTTGGTACTGCAGTGGGTACTATGCAAGTAAATAATTCTCTTTGGATACAAAGACACTATACCATATGCATATTTTTTTTTAAAGATGAAGATTTCGAACGCATCTGTTATTGAAGTATTTCCACCAGTGGGAGAATTTTTAAGAAAGTAGATTATTATCGTTTCTAACTTAAATGTAGAACGTTGTTTGTTTCGAAGTTATTTTATGAAGATTCGGTTGTGGGATTCTGTTACTGGCAGCCTCTCTGTTCAATGTATTTTTG

Fln Alignment:

CL19698Contig1___MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Q7FPA4_______________MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain