SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45577

Length: 346 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene45577
TACATATTCAGGTTCGTGTCTCTTAGCTTTGGATAGCAATGCTGCACATAAGCTGTGGATGTGGCAACGTAATGCTTTGAATCCATCTGGCAAGGTTAAAGCAAATGTCCAACCACAGCTTTGGCAACCACCCAATAACACCCTTATGAAAAATGATACTAGTGACAGAAGCCTAGAAGAGGTTGTCCCTTGCTTAGGTTTGTCAAAGAATGATTCGTATATAATATCTGCTTCTGGTGGGAGAGTGTCCTTGTTCAACATGGTAACATTTAAGCTCATGGATAGCTTCATGCCCCCTCCCCCAGCAGCAACATGTCTAGCTTTCAACCCTTTTGATAATAACATC

Ace file of the UniGene sp_v3.0_unigene45577 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Sma3	WD-repeat protein, putative	-	-	2.302e-09	-

Source	Gene names
Sma3	AT3G15880; At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F15P11.3; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; GSVIVT00032753001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; OJ1115_B04.1; Os01g02

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	transcription repressor activity	GO:0016564	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	primary shoot apical meristem specification	GO:0010072	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G15880.2	-	8.40779e-45	63%
RefSeq	Arabidopsis thaliana	NP_001189905.1	Topless-related protein 4 [Arabidopsis thaliana]	9.80909e-45	63%
RefSeq	Populus trichocarpa	XP_002308068.1	predicted protein [Populus trichocarpa]	0.0	66%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q27GK7

Fln msg: Distance to subject end: 234 aas, your sequence is shorter than subject: 115 - 1135

Fln protein: TYSGSCLLALDSNAAHKLWMWQRNALNPSGKVKANVQPQLWQPPNNTLMKNDTSDRSLEEVVPCLGLSKNDSYIISASGGRVSLFNMVTFKLMDSFMPPPPAATCLAFNPFDNNI

Protein Length: 116

Fln nts: TACATATTCAGGTTCGTGTCTCTTAGCTTTGGATAGCAATGCTGCACATAAGCTGTGGATGTGGCAACGTAATGCTTTGAATCCATCTGGCAAGGTTAAAGCAAATGTCCAACCACAGCTTTGGCAACCACCCAATAACACCCTTATGAAAAATGATACTAGTGACAGAAGCCTAGAAGAGGTTGTCCCTTGCTTAGGTTTGTCAAAGAATGATTCGTATATAATATCTGCTTCTGGTGGGAGAGTGTCCTTGTTCAACATGGTAACATTTAAGCTCATGGATAGCTTCATGCCCCCTCCCCCAGCAGCAACATGTCTAGCTTTCAACCCTTTTGATAATAACATC

Fln Alignment:

CL19112Contig1___TYSGSCLLALDSNAAHKLWMWQRNALNPSGKVKANVQPQLWQPPNNTLMKNDTSDRSLEEVVPCLGLSKNDSYIISASGGRVSLFNMVTFKLMDSFMPPPPAATCLAFNPFDNNI
Q27GK7_______________TNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAFHPQDNNI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain