SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45461

Length: 174 nt

UniGene Fasta

>sp_v3.0_unigene45461
AGAATGGGAGAATAGAAGATGCTCGTGATCTATTTGACAAAATGCCTGAACGAGATGTTATTTCATTCAATGCTATGATAGCAGGATATGCACAGAATGAACAAGGCGAGCAATCCCTGAAACTTTATTCGCGAATGAAAAAATTAGGCATGAAGCCAAATCAATCCACTCTCA

Ace file of the UniGene sp_v3.0_unigene45461

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9M9R6.2\|PPR43_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g14470 gb\|AEE29168.1\| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	-	-	2.0e-09	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G14470.1	Pentatricopeptide repeat (PPR) superfamily protein chr1:4954080-4955702 FORWARD LENGTH=540	1.0e-13	50%
RefSeq	Arabidopsis thaliana	NP_172899.1	pentatricopeptide repeat-containing protein [Arabidopsis thaliana]	2.0e-13	50%
RefSeq	Populus trichocarpa	XP_002315764.1	predicted protein [Populus trichocarpa]	1.0e-13	46%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 571 aas, your sequence is shorter than subject: 57 - 795

Fln protein: NGRIEDARDLFDKMPERDVISFNAMIAGYAQNEQGEQSLKLYSRMKKLGMKPNQSTL

Protein Length: 58

Fln nts: AGAATGGGAGAATAGAAGATGCTCGTGATCTATTTGACAAAATGCCTGAACGAGATGTTATTTCATTCAATGCTATGATAGCAGGATATGCACAGAATGAACAAGGCGAGCAATCCCTGAAACTTTATTCGCGAATGAAAAAATTAGGCATGAAGCCAAATCAATCCACTCTCA

Fln Alignment:

CL17845Contig1___GRIEDARDLFDKMPERDVISFNAMIAGYAQNEQGEQSLKLYSRMKKLGMKPNQSTL
B8LQA8_______________GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain