SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45284

Length: 194 nt

UniGene Fasta

>sp_v3.0_unigene45284
TCAGAAGAGTTATCACACCCATATGATAGAAAAAAGAGCCATCCCGCTGCTCTTACATCTTCTAAGTATGGTGTCAGTAAAATGAACATATTCAAAGCCTGCTTCGCCAGAGAATGGTTGCTTATAAAGAGAAATTCTTTTGTATATATATTCAAAACGGGACAGATTGTAGTTGTAGGGATACTCACAATGAC

Ace file of the UniGene sp_v3.0_unigene45284

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pleiotropic drug resistance protein TUR2 n=1 Tax=Spirodela polyrhiza RepID=TUR2_SPIPO	-	-	3.0e-18	65%
FL-Next	sp=Pleiotropic drug resistance protein TUR2; Spirodela polyrrhiza (Giant duckweed).	-	-	0.0	65%
Sma3	ATP-binding cassette transporter, putative	-	-	6.07e-33	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphonate-transporting ATPase.	EC:3.6.3.28	-	7.539e-28	-
Sma3	Polyamine-transporting ATPase.	EC:3.6.3.31	-	1.348e-06	-

Source	Gene names
Sma3	At1g15520; At1g66950; At2g36380; F1O11.1; F1O19.3; GSVIVT00019708001; GSVIVT00021655001; GSVIVT00022062001; GSVIVT00034321001; GSVIVT00034494001; GSVIVT00034944001; GSVIVT00034957001; LOC_Os01g42350; LOC_Os02g11760; LOC_Os06g36090; LOC_Os07g33780; OJ1003_

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to ethylene stimulus	GO:0009723	Biological Process	-
Sma3	response to salicylic acid stimulus	GO:0009751	Biological Process	-
Sma3	response to jasmonic acid stimulus	GO:0009753	Biological Process	-
Sma3	response to ozone	GO:0010193	Biological Process	-
Sma3	lead ion transport	GO:0015692	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Plant PDR ABC transporter associated	IPR013581	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G36380.1	PDR6, ATPDR6 pleiotropic drug resistance 6 chr2:15257583-15263627 FORWARD LENGTH=1453	2.0e-21	57%
RefSeq	Arabidopsis thaliana	NP_181179.2	ABC transporter G family member 34 [Arabidopsis thaliana]	2.0e-21	57%
RefSeq	Populus trichocarpa	XP_002311035.1	predicted protein [Populus trichocarpa]	9.0e-22	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: O24367

Fln msg: Distance to subject end: 897 aas, your sequence is shorter than subject: 64 - 1441

Fln protein: SEELSHPYDRKKSHPAALTSSKYGVSKMNIFKACFAREWLLIKRNSFVYIFKTGQIVVVGILTM

Protein Length: 65

Fln nts: TCAGAAGAGTTATCACACCCATATGATAGAAAAAAGAGCCATCCCGCTGCTCTTACATCTTCTAAGTATGGTGTCAGTAAAATGAACATATTCAAAGCCTGCTTCGCCAGAGAATGGTTGCTTATAAAGAGAAATTCTTTTGTATATATATTCAAAACGGGACAGATTGTAGTTGTAGGGATACTCACAATGAC

Fln Alignment:

CL15885Contig1___EELSHPYDRKKSHPAALTSSKYGVSKMNIFKACFAREWLLIKRNSFVYIFKTGQIVVVGILTM
O24367_______________EELSTPFDRSRNHPAALTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain