UniGene Name: sp_v3.0_unigene45238
Length: 197 nt
UniGene Fasta |
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>sp_v3.0_unigene45238
T |
Ace file of the UniGene sp_v3.0_unigene45238 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Eukaryotic initiation factor 4A-like protein n=2 Tax=Chlamydomonadales RepID=A8IP17_CHLRE | - | - | 1.0e-11 | 100% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 100% |
Sma3 | Dead box ATP-dependent RNA helicase, putative | - | - | 7.358e-06 | - |
Source | Gene names |
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Sma3 | AT1G54270; AT3G13920; At1g54270; At1g72730; At3g13920; CHLREDRAFT_188942; EIF4A; F20D21.9; F20D21_52; F28P22.8; GSVIVT00016530001; GSVIVT00032180001; GSVIVT00034135001; LOC_Os02g05330; LOC_Os06g48750; MICPUCDRAFT_49549; MICPUN_106753; MtrDRAFT_AC174465g13 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | cell wall | GO:0005618 | Cellular Component | 0.0 | - |
Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | plant-type cell wall | GO:0009505 | Cellular Component | 0.0 | - |
Sma3 | nucleic acid binding | GO:0003676 | Molecular Function | 0.0 | - |
Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
Sma3 | ATP-dependent helicase activity | GO:0008026 | Molecular Function | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | RNA helicase, ATP-dependent, DEAD-box, conserved site | IPR000629 | - | 0.0 | - |
Sma3 | Helicase, C-terminal | IPR001650 | - | 0.0 | - |
Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
Sma3 | DNA/RNA helicase, DEAD/DEAH box type, N-terminal | IPR011545 | - | 0.0 | - |
Sma3 | Helicase, superfamily 1/2, ATP-binding domain | IPR014001 | - | 0.0 | - |
Sma3 | RNA helicase, DEAD-box type, Q motif | IPR014014 | - | 0.0 | - |
Sma3 | IPR014021 | - | 0.0 | - | |
Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
Sma3 | IPR019782 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT3G13920.2 | - | 3.0e-13 | 95% |
RefSeq | Arabidopsis thaliana | NP_001030693.1 | translational initiation factor 4A-1 [Arabidopsis thaliana] | 4.0e-13 | 95% |
RefSeq | Populus trichocarpa | XP_002324737.1 | predicted protein [Populus trichocarpa] | 7.0e-14 | 100% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: C0PRI2
Fln msg: Separated hits, possible frame ERROR between 67 and 75, Distance to subject end: 21 aas, your sequence is shorter than subject: 66 - 428
Fln protein:
I
Protein Length:
67
Fln nts:
T
Fln Alignment:
CL15468Contig1___IDVQQVSLVINYDLPTQPENYLxxxRSGRFGRKGVAINFVTKDDE
C0PRI2_______________IDVQQVSLVINYDLPTQPENYLxxxRSGRFGRKGVAINFVTKDDE
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain