SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45221

Length: 216 nt

UniGene Fasta

>sp_v3.0_unigene45221
CTATATAGCATTGATCCCAAAAAGAAAGGATTCCCTTACTTTCACAGACTTCAGGCCGATATCTTTATGCAATGCCATCTATAAAATCATATCAAAAATCATAGCTGAAAGAATCTGTGGCAACCTAGCAATTCATATTTCAAAAGAGCAGCATGGGTTTCTAAGTGGCAGAAACATTTTAGAAGCAGTGGCTATTGCTCAGGAAGCTTTACATTC

Ace file of the UniGene sp_v3.0_unigene45221

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus elliottii RepID=O65863_PINEL	-	-	4.0e-12	52%
FL-Next	tr=Uncharacterized protein; Oryza glaberrima (African rice).	-	-	0.0	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: I1Q6M4

Fln msg: Distance to subject end: 87 aas, your sequence is shorter than subject: 71 - 179

Fln protein: YIALIPKRKDSLTFTDFRPISLCNAIYKIISKIIAERICGNLAIHISKEQHGFLSGRNILEAVAIAQEALH

Protein Length: 72

Fln nts: CTATATAGCATTGATCCCAAAAAGAAAGGATTCCCTTACTTTCACAGACTTCAGGCCGATATCTTTATGCAATGCCATCTATAAAATCATATCAAAAATCATAGCTGAAAGAATCTGTGGCAACCTAGCAATTCATATTTCAAAAGAGCAGCATGGGTTTCTAAGTGGCAGAAACATTTTAGAAGCAGTGGCTATTGCTCAGGAAGCTTTACATTC

Fln Alignment:

CL15219Contig1___IALIPKRKDSLTFTDFRPISLCNAIYKIISKIIAERICGNLAIHISKEQHGFLSGRNILEAVAIAQEALH
I1Q6M4_______________IVLIPKKNRSISPKDFRPISLCNVPYKILAKSIANRIKGKLPDFICDSQHAFIPGRRIANNIIIAQEIVH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain