SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45182

Length: 450 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene45182
AAGGTTCCAAAGAATACACTGAGATGGTGAGAGATGTAGATGAATATTTCCTTAAAACCGTATCTACTCCCTCCGAAGCTACACTTGTCATGGCCATTTTGGAGATCTTATCAAAGCATGCTAAAACTGAAGTGTACGTGGGACAAGTACAAGGATCCACACCAGAATGGGCCGATGACAACAGAATAGATGAAGCTTTCAACTGATTTTCATCGAGGTTAAAGCAGGTGGAGAAGAAGGTAAGAACTAGAAACAATAATCCCAAATTGAAGAACAGGCTTGGGCCCGCTCTAGTTCCATATACGTTGCTGTATCCTGACACCACTGATTTATCAAAGTCCGGTGGCCTTACCGGTCACGTTGTCCCTAACAGTATATCCATCTAACCAATTTTCTCCCATTCTCTGTACTGTGACAATACAATATACTAGTATTCACTTTCTATCACTC

Ace file of the UniGene sp_v3.0_unigene45182 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=B8LLK5_PICSI	-	-	0.0	71%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Lipoxygenase	-	-	1.508e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Lipoxygenase.	EC:1.13.11.12	-	4.555e-19	-

Source	KEGGs	Term	e value	Identity
Sma3	Linoleic acid metabolism	00591	4.555e-19	%
Sma3	alpha-Linolenic acid metabolism	00592	4.555e-19	%
Sma3	Biosynthesis of plant hormones	01070	4.555e-19	%
Sma3	Metabolic pathways	01100	4.555e-19	%

Source	Gene names
Sma3	LOC_Os03g52860; LOX; LOX1; LOX1.1; OSJNBa0057G07.15; Os03g0738600; OsI_13441; POPTRDRAFT_821983; RCOM_0677750; lipoxygenase;

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	lipoxygenase activity	GO:0016165	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipoxygenase	IPR000907	-	-
Sma3	Lipoxygenase, LH2	IPR001024	-	-
Sma3	Lipoxygenase, plant	IPR001246	-	-
Sma3	Lipoxygenase, C-terminal	IPR013819	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002315780.1	predicted protein [Populus trichocarpa]	4.0e-33	46%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK5

Fln msg: your sequence is shorter than subject: 128 - 930

Fln protein: GSKEYTEMVRDVDEYFLKTVSTPSEATLVMAILEILSKHAKTEVYVGQVQGSTPEWADDNRIDEAFN*FSSRLKQVEKKVRTRNNNPKLKNRLGPALVPYTLLYPDTTDLSKSGGLTGHVVPNSISI*

Protein Length: 129

Fln nts: AAGGTTCCAAAGAATACACTGAGATGGTGAGAGATGTAGATGAATATTTCCTTAAAACCGTATCTACTCCCTCCGAAGCTACACTTGTCATGGCCATTTTGGAGATCTTATCAAAGCATGCTAAAACTGAAGTGTACGTGGGACAAGTACAAGGATCCACACCAGAATGGGCCGATGACAACAGAATAGATGAAGCTTTCAACTGATTTTCATCGAGGTTAAAGCAGGTGGAGAAGAAGGTAAGAACTAGAAACAATAATCCCAAATTGAAGAACAGGCTTGGGCCCGCTCTAGTTCCATATACGTTGCTGTATCCTGACACCACTGATTTATCAAAGTCCGGTGGCCTTACCGGTCACGTTGTCCCTAACAGTATATCCATCTAA___CCAATTTTCTCCCATTCTCTGTACTGTGACAATACAATATACTAGTATTCACTTTCTATCACTC

Fln Alignment:

CL14876Contig1___GSKEYTEMVRDVDEYFLKTVSTPSEATLVMAILEILSKHAKTEVYVGQVQGSTPEWADDNRIDEAFN*FSSRLKQVEKKVRTRNNNPKLKNRLGPALVPYTLLYPDTTDLSKSGGLTGHVVPNSISI
B8LLK5_______________GSEEYSEMLRDVDAYFLRTVSTPRQATLIMAVLEILSQHAKHEVYIGQIHGSTPDWVDDSGVEEAFNRFSSRLVQLEKNVIDRNNNPNLKNRHGPAQVPYTLLYPNTSDLSESGGLIVQGVPNSISI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain