SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45155

Length: 1142 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene45155 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tir-nbs-lrr resistance protein (Fragment) n=2 Tax=Populus trichocarpa RepID=B9INY7_POPTR	-	-	7.0e-12	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNM8

Fln msg:

Fln protein: SEGYAESKWCLEELDLIINSKGKLIPVFCDIDPAALRRIDKGCYKTAFEKHRTREPVEKTKRWEDALARAANRQGLQFKMKESDLGEFLEKIVSIVLEKLKEGSPVDGKYPVAPEQAVEEFRASAAELEDFKLRQEFSREEFAVAPEPPEVDEDGPPNAGLFEVDEDGPPIEADEDGPLIAGLFELDEDGPPIEADEEASRRRPLRRMKKGRPSLRLYNGFPQWPPPIEEYEEASRSGPMRLTNGFPQRPHDEDGPPIEADEEASRRRPLRGMKKGRPLRLTNGFNGFPQ*

Protein Length: 292

Fln nts: TCGGAGGGGTATGCAGAATCGAAATGGTGCTTGGAGGAATTGGATCTCATTATCAACTCCAAAGGGAAGCTTATTCCTGTCTTCTGTGACATTGATCCTGCTGCTCTCCGTCGCATTGACAAAGGATGTTATAAGACGGCCTTTGAAAAACACAGAACGAGAGAACCCGTGGAAAAGACGAAAAGATGGGAGGATGCCCTGGCAAGAGCCGCAAATCGTCAAGGCCTCCAATTCAAAATGAAGGAAAGCGACCTTGGGGAATTTTTGGAGAAAATTGTGAGCATTGTTTTGGAGAAATTGAAAGAGGGATCACCCGTTGACGGCAAATATCCAGTCGCCCCAGAGCAGGCGGTGGAGGAGTTCCGTGCCAGCGCAGCTGAATTGGAGGACTTCAAACTTCGTCAGGAATTCAGTAGAGAAGAATTTGCAGTGGCACCTGAGCCACCTGAGGTGGATGAGGATGGGCCGCCCAATGCTGGGCTCTTTGAGGTGGATGAAGATGGGCCGCCCATTGAGGCGGATGAAGATGGGCCGCTCATTGCTGGGCTGTTTGAGCTGGATGAAGATGGGCCGCCCATTGAGGCGGATGAAGAGGCCTCACGCCGCCGCCCATTGAGGCGGATGAAGAAGGGCCGTCCATCATTGAGGCTGTATAATGGGTTTCCTCAATGGCCGCCGCCCATTGAGGAATATGAAGAGGCTTCACGCAGCGGCCCAATGAGGCTGACAAATGGGTTTCCTCAACGGCCCCATGATGAAGATGGGCCGCCCATTGAGGCGGATGAAGAGGCCTCACGCCGCCGCCCATTGAGGGGGATGAAGAAGGGCCGCCCATTGAGGCTGACGAATGGGTTTAATGGGTTTCCTCAATGA___CCCCCTTGAGGCGGATGAAGATGGGCCGCCCATTAGAGGGATGAAGATGGGCCGCCCATTGCTGGGCTGTTTGAGCTGGATCAAGATGGGCCACCCATTGCTGGGCTGTTTGAGCTGAATGAAGATGGGCCGGCTCTAATTGAGGATATCTTTGGAAATCCCCTAAATCTCGTTTTGTAGCAGTCTAATTGGCAGCAGTTTTCCATTTTTATGGAAAAGATAATTGATGTTTCCAAAAGGTGAGTCTTAAGCTTATCATAATTACTGCG

Fln Alignment:

CL14512Contig1___SEGYAESKWCLEELDLIINSKGKLIPVFCDIDPAALRRIDKGCYKTAFEKHRTREPVEKTKRWEDALARAANRQGLQFKMKESDLGEFLEKIVSIVLEKLKEGSPVDGKYPVAPEQAVEEFRA-----SAAELEDFKLRQEF--------SRXXXXXXXXXXXXXXXXXPNAGLFEVDEDGPPI----EADEDGPLIAGLFELDEDGP
A9NNM8_______________SERYAESSWCLDELDLILRSKRPFIPVFCDVEPWALRRIEKGCYQKAFEKHEGREPVEKTKRWKDALSQASFLQGMPFKTKENDYWDFVEKIVGIVLKKLKQGSLVVAKYPVRLEQAAEAFPAEVFPTSASELEDLKVCQEFITEEFALAHGPDDDRPDLTELFEADGPAISELFELNDNGPAISEMFETDEDGPAWRDLFKPDKDGP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain