SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45140

Length: 515 nt

UniGene Fasta

>sp_v3.0_unigene45140
ACTTCACTGGACCTCTTCCTCAAGAGATTGGAAACAGTACATCTCTTCAGCTTCTTGATGTCCACAACAACCGTTTGACAGGTAAAATCCCAGTTGAGCTTAGTAATCTCATTAATCTAGAAACGCTAGATCTCAGTGGAAATTACTTCAGTGGTGAGATTCCGTTCCTTTTGGGCAAACTGAAATACCTGAACAAGCTGATTCTTAGCAATAATATTTTATCTGGTAACATACCCCAAGCATTGCAGAATTGCCAGAAGCTGACATTACTTGATTTGAGCTGTAATAATCTTTCATCTACCATCCCTAAAGGAATAGGATCCATTACTAGCTTGGCTATCAATCTCAACCTCAGCTGGAATGCATTTACCGGCCAAATCCCTAAGGAATTTTCCCTTTTAACACAGTTGCAATCATTGGATCTTTCCCACAACTACCTATCCGGGGATGTCAAGGTGCTTGGGGCACTTACAAGCTTGACATCTTTGAATGTTGCCTTCAATAATTTCTCTGGC

Ace file of the UniGene sp_v3.0_unigene45140

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat receptor protein kinase EXS, putative n=1 Tax=Ricinus communis RepID=B9SM68_RICCO	-	-	4.00001e-40	52%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	0.0	50%
Sma3	Leucine-rich repeat receptor-like protein kinase	-	-	1.308e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	1.475e-17	-
Sma3	Receptor protein-tyrosine kinase.	EC:2.7.10.1	-	2.58e-06	-
Sma3		EC:2.7.11.3-	-	1.154e-07	-

Source	Gene names
Sma3	AT1G34110; AT4G26540; AT4G36180; AT4g36180; AT5G48940; AT5G63930; At1g17230; At1g17230/F20D23_7; At2g24130; At3g24240; At5g56040; At5g63930; B1047H05.38; B1292H11.1; B1307A11.12; B1307A11.7; CLL6; ERL1c; ERL1d; ERL2a; F12G12.7; F20D23.7; F23E13.70; FLS2;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	flagellum	GO:0019861	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Ribosomal protein S12, bacteria	IPR005679	-	-
Sma3	Ribosomal protein S12/S23	IPR006032	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G34110.1	Leucine-rich receptor-like protein kinase family protein chr1:12417331-12421246 REVERSE LENGTH=1072	0.0	65%
RefSeq	Arabidopsis thaliana	NP_174673.3	leucine-rich receptor-like protein kinase [Arabidopsis thaliana]	0.0	65%
RefSeq	Populus trichocarpa	XP_002302156.1	predicted protein [Populus trichocarpa]	1.4013e-45	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Distance to subject end: 454 aas, your sequence is shorter than subject: 171 - 1145

Fln protein: FTGPLPQEIGNSTSLQLLDVHNNRLTGKIPVELSNLINLETLDLSGNYFSGEIPFLLGKLKYLNKLILSNNILSGNIPQALQNCQKLTLLDLSCNNLSSTIPKGIGSITSLAINLNLSWNAFTGQIPKEFSLLTQLQSLDLSHNYLSGDVKVLGALTSLTSLNVAFNNFSG

Protein Length: 172

Fln nts: ACTTCACTGGACCTCTTCCTCAAGAGATTGGAAACAGTACATCTCTTCAGCTTCTTGATGTCCACAACAACCGTTTGACAGGTAAAATCCCAGTTGAGCTTAGTAATCTCATTAATCTAGAAACGCTAGATCTCAGTGGAAATTACTTCAGTGGTGAGATTCCGTTCCTTTTGGGCAAACTGAAATACCTGAACAAGCTGATTCTTAGCAATAATATTTTATCTGGTAACATACCCCAAGCATTGCAGAATTGCCAGAAGCTGACATTACTTGATTTGAGCTGTAATAATCTTTCATCTACCATCCCTAAAGGAATAGGATCCATTACTAGCTTGGCTATCAATCTCAACCTCAGCTGGAATGCATTTACCGGCCAAATCCCTAAGGAATTTTCCCTTTTAACACAGTTGCAATCATTGGATCTTTCCCACAACTACCTATCCGGGGATGTCAAGGTGCTTGGGGCACTTACAAGCTTGACATCTTTGAATGTTGCCTTCAATAATTTCTCTGGC

Fln Alignment:

CL14365Contig1___FTGPLPQEIGNSTSLQLLDVHNNRLTGKIPVELSNLINLETLDLSGNYFSGEIPFLLGXXXXXXXXXXXXXXXXXXXPQALQNCQKLTLLDLSCNNLSSTIPKGIGSITSLAINLNLSWNAFTGQIPKEFXXXXXXXXXXXXHNYLSGDVKVLGALT
Q9FEU2_______________FSGSIPAEIGGCSQLQMLDLHGNRLGGELPRALGFLHGLQVVDLSANELTGLIPANLGNLVALTKLTLNGNALSGAIPWEISRCTNLQLLDLSLNRFSGQIPPEMGKCKRLEIALNLSWNNLSGSIPAQFSGLTKLASLDLSHNLLSGNLSALAQLS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain