SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45050

Length: 1247 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene45050 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein S4 (Fragment) n=1 Tax=Nicotiana tabacum RepID=Q5M9U0_TOBAC	-	-	0.0	67%
FL-Next	sp=30S ribosomal protein S4, chloroplastic; verticillata). Plastid; Chloroplast.	-	-	0.0	40%
Sma3	Ribosomal protein S4	-	-	3.55299e-41	-

Source	Gene names
Sma3	AtMg00290; GSVIVT00035267001; POPTRDRAFT_285733; POPTRDRAFT_592416; RCOM_1972410; RPS4; rps4; rps4-1;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	small ribosomal subunit	GO:0015935	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	rRNA binding	GO:0019843	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S4/S9, N-terminal	IPR001912	-	-
Sma3	RNA-binding S4 domain	IPR002942	-	-
Sma3	Ribosomal protein S4, bacterial-type	IPR005709	-	-
Sma3	Ribosomal protein S4, conserved site	IPR018079	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	ATMG00290.1	RPS4 mitochondrial ribosomal protein S4 chrM:82028-83116 REVERSE LENGTH=362	61%
RefSeq	Arabidopsis thaliana	NP_178806.1	ribosomal protein S4 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002333103.1	predicted protein, partial [Populus trichocarpa]	66%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: G3XHJ6

Fln msg: STOP codon was not found. Distance to subject end: 105 aas, your sequence is longer than subject: 316 - 202

Fln protein: MPALRFKTCRLLLENVWNKKLTRIQRRILRRLRSKRRSIRKNLSLRQNFHSYIKLQAIRKLSLFYGNLPITEMHGGTERASYIPFLLNLETRLDVILVRLHFCETIPQARQLISHRKIRVNNSMGNITRFKVSRGDLISIEENYVRTMGRKVRKYFYIEILVNKIVGKFLDHSERMWRRTKTRWFRLLDKKKGCRLLLKSWFLQQLRSSMQEKDLERINSSRLEGVCLGSLFAEHNKMKRNLYYSEFLLLLKRRNGKTRIPTRTMSLIVNNGNLCSDSTYCFESPYCDTRKIRIRGIELPTHYLEVNYRTLKAVVF

Protein Length: 317

Fln nts: GGGGGGAGAGGGGGGGGGCTACAAGCCCTCTCCCGTTGCTAATAGTTAGTTTGACCTTTCTCGATGGCCTTAAGCAAGCGGCTTTAACCACTCACTGGGTTGGGTGAAGATATCTCCCGGAGTGATAGGAAGAGGACACTCGACGCTGGCGGGTTATTATCCATTCATCACACCCTTTCGAGATCAAAAGGCGGATAGATATAGGTCTAGCAAATCATCCGATGAAGCAGCAGAGGATATGGGTTCGATTCCCGTTATACGCGATGTGGTTAATGAAAAAGACCGATCCAGCGAGAT_-_ATGCCCGCATTAAGATTTAAAACTTGTCGTCTACTTCTAGAAAATGTTTGGAACAAAAAACTGACAAGAATACAACGCCGCATTCTCCGAAGATTGAGAAGCAAGAGAAGATCTATTAGGAAAAATCTTTCTCTGAGACAGAATTTTCACAGTTACATCAAATTACAAGCCATACGAAAGTTGTCCCTTTTTTATGGAAATTTACCCATCACAGAGATGCACGGAGGGACAGAACGAGCTTCATATATACCTTTTCTACTCAATCTAGAAACAAGATTGGACGTCATCCTGGTTCGTCTCCATTTCTGTGAAACTATTCCTCAAGCGAGGCAGCTGATAAGTCACCGAAAGATTCGTGTGAATAATTCAATGGGTAACATAACTCGTTTTAAAGTGTCCCGCGGTGATCTAATATCTATTGAAGAGAATTATGTCAGAACCATGGGGAGAAAAGTGAGGAAATATTTCTATATTGAAATATTAGTAAATAAAATAGTGGGAAAATTTCTAGATCACTCGGAAAGAATGTGGAGAAGAACCAAAACAAGATGGTTCCGCCTACTGGATAAAAAAAAAGGGTGCCGCCTCTTACTAAAATCCTGGTTTTTGCAACAGTTGCGTTCTTCCATGCAAGAAAAAGACTTAGAGAGGATAAATTCTTCTAGATTAGAAGGAGTATGCTTAGGCAGCTTATTCGCCGAGCACAACAAAATGAAGAGAAATTTGTATTATTCCGAATTCTTACTATTATTGAAGAGAAGGAACGGAAAAACCCGGATTCCTACTCGAACAATGAGTCTTATTGTTAATAACGGAAATTTATGTAGCGATTCAACTTATTGTTTTGAATCCCCTTATTGCGATACCAGGAAGATAAGAATTAGAGGAATTGAACTACCTACTCATTACTTGGAGGTCAATTATAGAACACTGAAAGCTGTGGTATTTTA

Fln Alignment:

CL13323Contig1___LETRLDVILVRLHFCETIPQARQLISHRKIRVNNSMGNITRFKVSRGDLISIEENYVRTMGRKVRKYFYIEILVNKIVGKFLDH
G3XHJ6_______________LEMRLDNIIFRLGMALTIPEARQLVNHRHILVNNRMVDIPSYRCKPQDMISIRDQQ-RSKNRIQKNIDFYQ--RDKMSGKVLNH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain