SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene45016

Length: 463 nt

UniGene Fasta

>sp_v3.0_unigene45016
GGAATATGCTTCATCACTTAATTCAGAGACCAAGCAAGCATTGACTTGGCTGGCAAACCTCACTGCGGACAAACTCTCAAAGATGGAAACTACGGGCATTACACTTCCTCCAGGCTTGAGGATGGTTTCAGTGTCTGGACATGATTTACATGGATATTACAAAATATTTGAGGCATTTGGCCTTGTGCAAAGGAAGGAAGGAAAGGGGATTGCCAGGTGGTGTTATCCTCGTGGTCTAGACAATCTTGTATTTGATGTGGTAGCTTTAAAAAATTCTCTTACCAGGCCAGTTGATGTAGTCAGGCTATACCTGTCCAGAGCGACCCTTATTGTAGTACCTGCAAATCTAGTAGAGCACTGGAAAAACCAAATTTTGAAACATATCAGGCCTGGGCAAATACGAATGTTTATCTGGGTTGATCAGAGAAAACCACCTCTAGCTCACAACCTTGCGTGGGACTAT

Ace file of the UniGene sp_v3.0_unigene45016

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromatin remodeling complex subunit n=1 Tax=Populus trichocarpa RepID=B9GWX1_POPTR	-	-	1.4013e-45	58%
FL-Next	sp=F-box protein At3g54460; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%

Source	Gene names
Sma3	At3g54455; At3g54460; CHR943; GSVIVT00030933001; Os01g0952200; OsI_05224; OsJ_04781; P0431G06.4; POPTRDRAFT_800217; RCOM_1452670; T14E10.30; VITISV_032626;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	SNF2-related	IPR000330	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, CW-type	IPR011124	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54460.1	SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein chr3:20162050-20167186 REVERSE LENGTH=1378	3.00004e-41	51%
RefSeq	Arabidopsis thaliana	NP_680129.1	F-box protein [Arabidopsis thaliana]	4.00001e-41	51%
RefSeq	Populus trichocarpa	XP_002303924.1	chromatin remodeling complex subunit [Populus trichocarpa]	0.0	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9M1I1

Fln msg: Distance to subject end: 577 aas, your sequence is shorter than subject: 154 - 1378

Fln protein: EYASSLNSETKQALTWLANLTADKLSKMETTGITLPPGLRMVSVSGHDLHGYYKIFEAFGLVQRKEGKGIARWCYPRGLDNLVFDVVALKNSLTRPVDVVRLYLSRATLIVVPANLVEHWKNQILKHIRPGQIRMFIWVDQRKPPLAHNLAWDY

Protein Length: 155

Fln nts: GGAATATGCTTCATCACTTAATTCAGAGACCAAGCAAGCATTGACTTGGCTGGCAAACCTCACTGCGGACAAACTCTCAAAGATGGAAACTACGGGCATTACACTTCCTCCAGGCTTGAGGATGGTTTCAGTGTCTGGACATGATTTACATGGATATTACAAAATATTTGAGGCATTTGGCCTTGTGCAAAGGAAGGAAGGAAAGGGGATTGCCAGGTGGTGTTATCCTCGTGGTCTAGACAATCTTGTATTTGATGTGGTAGCTTTAAAAAATTCTCTTACCAGGCCAGTTGATGTAGTCAGGCTATACCTGTCCAGAGCGACCCTTATTGTAGTACCTGCAAATCTAGTAGAGCACTGGAAAAACCAAATTTTGAAACATATCAGGCCTGGGCAAATACGAATGTTTATCTGGGTTGATCAGAGAAAACCACCTCTAGCTCACAACCTTGCGTGGGACTAT

Fln Alignment:

CL13017Contig1___EYASSLNSETKQALTWLANLTADKLSKMETTGITLPP-GLRMVSVSGHDLHGYYKIFEAFGLVQRKEGKGIARWCYPRGLDNLVFDVVALKNSLTRPVDVVRLYLSRATLIVVPANLVEHWKNQILKHIRPGQIRMFIWVDQRKPPLAHNLAWDY
Q9M1I1_______________EHKSSVSSTVKKALIWLAKLPLEKLSQMETVGLPGPVLGLKL------DALGFQRIFRAFGLKSRVE-KGVTKWFYPKFLENLVFDVPALKVALCQPLDTFRLYLSKATLIVVPTNLVNHWLTQIQKHVCSDQLRILVWADHIELS-PHSLAWDY

SSRs (tot: 1)

Start position	End position	Sequence	Length
190	203	AAGG AAGG AAGG AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain