SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44908

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene44908
GCTACACTTGCTATGATAGAGGAAGCACTTAGAAATGAAGTGGAATCTAGAGAAGGGATTGAATGGGTAGCAAAACAATTTTCCTTTTACACTCTTCAGGACAGCATAAATTCAGTAGATGCAGTGAACGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGCTTGTTTGCCTTAAACACAAAAAATCTCAGGTAGCAGTTAGATGTATGGGTGTGATAAGCCACCT

Ace file of the UniGene sp_v3.0_unigene44908

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	53%

Source	Gene names
Sma3	GSVIVT00035700001;

Source	GOs	Term	Type	e value	Identity
Sma3	ATP binding	GO:0005524	Molecular Function	0.0	-
Sma3	ATPase activity	GO:0016887	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79190.1	ARM repeat superfamily protein chr1:29788639-29794116 FORWARD LENGTH=1335	3.0e-16	46%
RefSeq	Arabidopsis thaliana	NP_178040.5	uncharacterized protein [Arabidopsis thaliana]	4.0e-16	46%
RefSeq	Populus trichocarpa	XP_002310678.1	predicted protein [Populus trichocarpa]	2.0e-17	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H9X3

Fln msg: Distance to subject end: 204 aas, your sequence is shorter than subject: 80 - 1408

Fln protein: ATLAMIEEALRNEVESREGIEWVAKQFSFYTLQDSINSVDAVNDGNRLLPAMNKIWPYLLVCLKHKKSQVAVRCMGVISH

Protein Length: 81

Fln nts: GCTACACTTGCTATGATAGAGGAAGCACTTAGAAATGAAGTGGAATCTAGAGAAGGGATTGAATGGGTAGCAAAACAATTTTCCTTTTACACTCTTCAGGACAGCATAAATTCAGTAGATGCAGTGAACGATGGAAACAGGCTTTTACCTGCAATGAACAAAATATGGCCTTATCTGCTTGTTTGCCTTAAACACAAAAAATCTCAGGTAGCAGTTAGATGTATGGGTGTGATAAGCCACCT

Fln Alignment:

CL11933Contig1___ATLAMIEEALRNEVESREGIEWVAKQFSFYTLQDSINSVDAVNDGNRLLPAMNKIWPYLLVCLKHKKSQVAVRCMGVIS
F6H9X3_______________ATLAKVEEAYRHEKETKEAIERVIKMCSFYHLQDTLDAAEEGTDENRLLPAMNKIWPFLVVCIRNKNPVAVRRCLDVMS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain