SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44634

Length: 535 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene44634
GACTTCGACGAGTCAAACACGTTAAAACAGGGAGACGCATTAAATGCACGCACAAGGAAGATGGGCATTTGAATGGCGTTTGGCTATTACATCGTGCTGTGTATCCGTCTTCTCCTGCAGGTGCATTGTTTCAGTTGGCATTTATTCGGCACTTGGAAGAGTCAGCTGGATTTCCGCTGTGGGAGCAGGATGAAGATGCAAGGATTCTTCGCATTGGATTTGTCAAACCTGAAGTAGTTTCTTGGTCCCCAAGAATTATTGTACTCCACAATTTTTTGAGTGCTGAGGAGTGTGATTACCTGATTGCAACTGCTCGTCCCAGACTCCAAGTTTCTACTGTGGTGGACACTAAAACAGGCAAGGGTGTTAAAAGTAATGTTCGAACAAGTTCTGGGATGTTCTTAAATTACGAGGAGAAAAAGTATCCAATGATTCAGGCAATTGAGAAGCGCATTTCAGTTTATTCTCAAGTACCAGTAGAAAATGGAGAACTTATGCAGGTTTTACGGTATGAGGAAGGTGAATTTTATAAATC

Ace file of the UniGene sp_v3.0_unigene44634 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	P4H isoform 1 n=2 Tax=Arabidopsis RepID=Q9ZW86_ARATH	-	-	0.0	66%
FL-Next	tr=Putative prolyl 4-hydroxylase, alpha subunit; Cryptomeria japonica (Japanese cedar) (Cupressus japonica).	-	-	0.0	53%
Sma3	Putative prolyl 4-hydroxylase, alpha subunit	-	-	1.62e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Procollagen-proline dioxygenase.	EC:1.14.11.2	-	2.04e-14	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		2.04e-14	%
Sma3	Metabolic pathways	01100		2.04e-14	%

Source	Gene names
Sma3	At1g20270; At2g17720; At2g43080; At5g66060; F14O10.12; GSVIVT00013719001; GSVIVT00015502001; GSVIVT00033564001; LOC_Os03g07000; LOC_Os10g35470; MICPUCDRAFT_34636; OSIGBa0111I14.1; OSJNBa0017E08.15; OSJNBb0085H11.11; OSTLU_37102; Os04g0346000; Os10g0497800

Source	GOs	Term	Type	Identity
Sma3	procollagen-proline 4-dioxygenase activity	GO:0004656	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	GO:0016706	Molecular Function	-
Sma3	peptidyl-proline hydroxylation to 4-hydroxy-L-proline	GO:0018401	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Metridin-like ShK toxin	IPR003582	-	-
Sma3	Oxoglutarate/iron-dependent oxygenase	IPR005123	-	-
Sma3	Prolyl 4-hydroxylase, alpha subunit	IPR006620	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G43080.1	AT-P4H-1 P4H isoform 1 chr2:17915755-17918599 FORWARD LENGTH=283	66%
RefSeq	Arabidopsis thaliana	NP_181836.1	P4H isoform 1 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002302889.1	predicted protein [Populus trichocarpa]	62%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q1XG55

Fln msg: Distance to subject end: 111 aas, atg_distance in limit (1-15): atg_distance = 16, W2: There is no M at the beginning, your sequence is shorter than subject: 177 - 302

Fln protein: LRRVKHVKTGRRIKCTHKEDGHLNGVWLLHRAVYPSSPAGALFQLAFIRHLEESAGFPLWEQDEDARILRIGFVKPEVVSWSPRIIVLHNFLSAEECDYLIATARPRLQVSTVVDTKTGKGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFYK

Protein Length: 178

Fln nts: GACTTCGACGAGTCAAACACGTTAAAACAGGGAGACGCATTAAATGCACGCACAAGGAAGATGGGCATTTGAATGGCGTTTGGCTATTACATCGTGCTGTGTATCCGTCTTCTCCTGCAGGTGCATTGTTTCAGTTGGCATTTATTCGGCACTTGGAAGAGTCAGCTGGATTTCCGCTGTGGGAGCAGGATGAAGATGCAAGGATTCTTCGCATTGGATTTGTCAAACCTGAAGTAGTTTCTTGGTCCCCAAGAATTATTGTACTCCACAATTTTTTGAGTGCTGAGGAGTGTGATTACCTGATTGCAACTGCTCGTCCCAGACTCCAAGTTTCTACTGTGGTGGACACTAAAACAGGCAAGGGTGTTAAAAGTAATGTTCGAACAAGTTCTGGGATGTTCTTAAATTACGAGGAGAAAAAGTATCCAATGATTCAGGCAATTGAGAAGCGCATTTCAGTTTATTCTCAAGTACCAGTAGAAAATGGAGAACTTATGCAGGTTTTACGGTATGAGGAAGGTGAATTTTATAAATC

Fln Alignment:

CL8053Contig1___EVVSWSPRIIVLHNFLSAEECDYLIATARPRLQVSTVVDTKTGKGVKSNVRTSSGMFLNYEEKKYPMIQAIEKRISVYSQVPVENGELMQVLRYEEGEFY
Q1XG55_______________EVLSWEPRAFLYHNFLAKDECEYLINIAKPHMVKSMVVDSKTGGSMDSNVRTSSGWFLNRGQDK--IIRRIEKRIADFSHIPVEHGEGLHVLHYEVEQKY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain