SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44489

Length: 505 nt

UniGene Fasta

>sp_v3.0_unigene44489
GTGGAAGCAGTACGTGCAGTGCAAAGAAGAAATTATGACATCATTCTAATGGATGTCTGTATGCCAGTAATGGATGGCCTTGAAGCCACTCGATTGATTCGTGCATATGAGCTGACCGGTAACTGGGATGCTGCTGAAGCAGCGGGAGTGGGCAGATCTGATTGTTCCACAGAACCCCAACTGGGCTGTCAAGAAAAATCTCTTCACAGGAAGAGAACACCAATAATTGCAATGACAGCCAATGCTTTGGCCGAGGGTATTGCTGAATGTTATGCAAATGGAATGGACTCCTTTGTTGCAAAACCGGTGACATTTCAGAAATTGAATGAGTCGCTTTGTGCCTATATCCCTGGTTGAAAGCTGCCAATGAAAGCAGTTGTTTAAGTATATGTGGGGTAGGTCCACTTGTAAGCATTCCGGTTATGACACTCTACAGAAGTGAATTTTGTAACGTTTCATGTATGTATTTCAACCTTCATGTGGCAAGAAAAACTGTCACACTGTA

Ace file of the UniGene sp_v3.0_unigene44489

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	histidine kinase-like protein [Arabidopsis thaliana]	-	-	6.0e-30	59%
FL-Next	sp=Histidine kinase 5; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Sma3	Cytokinin receptor AtCKI2-like protein	-	-	2.993e-16	-

Source	Gene names
Sma3	AT5g10720; At5g10720; CKI2; CKI2b; CKI2c; CKI2d; CKI2e; GSVIVT00000738001; OSJNBa0085J13.29; Os06g0654300; OsI_23953; OsJ_22203; P0709F06.12; PHYPADRAFT_10726; PHYPADRAFT_174575; PHYPADRAFT_179812; PHYPADRAFT_192000; POPTRDRAFT_578360; POPTRDRAFT_802509;

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	two-component sensor activity	GO:0000155	Molecular Function	-
Sma3	two-component response regulator activity	GO:0000156	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cytokinin mediated signaling pathway	GO:0009736	Biological Process	-
Sma3	peptidyl-histidine phosphorylation	GO:0018106	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	PAS-associated, C-terminal	IPR000700	-	-
Sma3	PAC motif	IPR001610	-	-
Sma3	Signal transduction response regulator, receiver domain	IPR001789	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain	IPR003661	-	-
Sma3	Signal transduction histidine kinase-related protein, C-terminal	IPR004358	-	-
Sma3	Signal transduction histidine kinase, core	IPR005467	-	-
Sma3	PAS fold-4	IPR013656	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G10720.1	AHK5, CKI2, HK5 histidine kinase 5 chr5:3386835-3390541 FORWARD LENGTH=922	1.0e-35	59%
RefSeq	Arabidopsis thaliana	NP_196633.2	histidine kinase 5 [Arabidopsis thaliana]	2.0e-35	59%
RefSeq	Populus trichocarpa	XP_002324940.1	histidine kinase cytokinin receptor, partial [Populus trichocarpa]	5.0e-38	63%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q3S4A7

Fln msg: your sequence is shorter than subject: 119 - 922

Fln protein: VEAVRAVQRRNYDIILMDVCMPVMDGLEATRLIRAYELTGNWDAAEAAGVGRSDCSTEPQLGCQEKSLHRKRTPIIAMTANALAEGIAECYANGMDSFVAKPVTFQKLNESLCAYIPG*

Protein Length: 120

Fln nts: GTGGAAGCAGTACGTGCAGTGCAAAGAAGAAATTATGACATCATTCTAATGGATGTCTGTATGCCAGTAATGGATGGCCTTGAAGCCACTCGATTGATTCGTGCATATGAGCTGACCGGTAACTGGGATGCTGCTGAAGCAGCGGGAGTGGGCAGATCTGATTGTTCCACAGAACCCCAACTGGGCTGTCAAGAAAAATCTCTTCACAGGAAGAGAACACCAATAATTGCAATGACAGCCAATGCTTTGGCCGAGGGTATTGCTGAATGTTATGCAAATGGAATGGACTCCTTTGTTGCAAAACCGGTGACATTTCAGAAATTGAATGAGTCGCTTTGTGCCTATATCCCTGGTTGA___AAGCTGCCAATGAAAGCAGTTGTTTAAGTATATGTGGGGTAGGTCCACTTGTAAGCATTCCGGTTATGACACTCTACAGAAGTGAATTTTGTAACGTTTCATGTATGTATTTCAACCTTCATGTGGCAAGAAAAACTGTCACACTGTA

Fln Alignment:

CL6277Contig1___VEAVRAVQRRNYDIILMDVCMPVMDGLEATRLIRAYELTGNWDAAEAAGVGRSDCSTEPQLGCQEKSLHRKRTPIIAMTANALAEGIAECYANGMDSFVAKPVTFQKLNESLCAYI
Q3S4A7_______________VEAITAINSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDIS--TSENEQVCMRPT---NRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain