SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44481

Length: 323 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene44481
ATTGTGGGTACCTTGAAAAAGGGCATAAACCCGTTGTCTGTTGGCAAGTTAGTCTTTCATGGAGAGTATTTGGGGACCAGTTGGAAGGCAGGGCTGATAATGGGTCTCATTTCCCTAGCTGAAGGATTAGCAGTGGGAAGAACATTTGCTCTCTTCAAGAATTATCAAATTGATGGCAATAAGGAGATGGTTGCGATTGGAATAATGAATGTAGTCGGTTCCTGCACTTCCTGTTATGTTTCAACAGGTGCTTTTTCCAGGACAGCAGTGAATTTCAATGCTGGATGCAAAACGGTAGCCTCAAATATAGTAATGGCCATTGC

Ace file of the UniGene sp_v3.0_unigene44481 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sulfate transporter, putative n=1 Tax=Ricinus communis RepID=B9SFG4_RICCO	-	-	5.0e-38	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Sma3	Sulfate transporter	-	-	0.0	-

Source	Gene names
Sma3	57h21.23; 80A08_15; ATEM1.15; At1g22150; At1g23090; At1g77990; At1g78000; At3g15990; At3g51895; At4g02700; At4g08620; At5g10180; At5g19600; F28K19.21; F2E2.22; F4F15.10; GSVIVT00015270001; GSVIVT00015271001; GSVIVT00015272001; GSVIVT00016766001; GSVIVT000

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	secondary active sulfate transmembrane transporter activity	GO:0008271	Molecular Function	-
Sma3	symporter activity	GO:0015293	Molecular Function	-
Sma3	tRNA modification	GO:0006400	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	sulfate transport	GO:0008272	Biological Process	-
Sma3	nodulation	GO:0009877	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Sulphate anion transporter	IPR001902	-	-
Sma3	Sulphate transporter/antisigma-factor antagonist STAS	IPR002645	-	-
Sma3		IPR002917	-	-
Sma3	tRNA modification GTPase TrmE	IPR004520	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR005289	-	-
Sma3	Sulphate transporter	IPR011547	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	Sulphate anion transporter, conserved site	IPR018045	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	GTP-binding protein TrmE, N-terminal	IPR018948	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G51895.1	" SULTR3;1, AST12 sulfate transporter 3;1 chr3:19251503-19255677 REVERSE LENGTH=658"	4.2039e-45	67%
RefSeq	Arabidopsis thaliana	NP_190758.2	sulfate transporter 3.1 [Arabidopsis thaliana]	5.60519e-45	67%
RefSeq	Populus trichocarpa	XP_002300821.1	sulfate/bicarbonate/oxalate exchanger and transporter sat-1 [Populus trichocarpa]	0.0	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKN3

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 107 - 680

Fln protein: IVGTLKKGINPLSVGKLVFHGEYLGTSWKAGLIMGLISLAEGLAVGRTFALFKNYQIDGNKEMVAIGIMNVVGSCTSCYVSTGAFSRTAVNFNAGCKTVASNIVMAI

Protein Length: 108

Fln nts: ATTGTGGGTACCTTGAAAAAGGGCATAAACCCGTTGTCTGTTGGCAAGTTAGTCTTTCATGGAGAGTATTTGGGGACCAGTTGGAAGGCAGGGCTGATAATGGGTCTCATTTCCCTAGCTGAAGGATTAGCAGTGGGAAGAACATTTGCTCTCTTCAAGAATTATCAAATTGATGGCAATAAGGAGATGGTTGCGATTGGAATAATGAATGTAGTCGGTTCCTGCACTTCCTGTTATGTTTCAACAGGTGCTTTTTCCAGGACAGCAGTGAATTTCAATGCTGGATGCAAAACGGTAGCCTCAAATATAGTAATGGCCATTGC

Fln Alignment:

CL6181Contig1___VGTLKKGINPLSVGKLVFHGEYLGTSWKAGLIMGLISLAEGLAVGRTFALFKNYQIDGNKEMVAIGIMNVVGSCTSCYVSTGAFSRTAVNFNAGCKTVASNIVMAI
B8LKN3_______________IGHLQKGLNPPSISMLCFHGPYLSLALKTGLVTGLIALTEGIAVGRTFASIKGYQVDGNKEMMAIGFMNLAGSSTSCYVTTGSFSRSAVNYNAGCKSAVSNIVMAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain