SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44435

Length: 2206 nt

UniGene Fasta

>sp_v3.0_unigene44435
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGTGCCTGAGTTCCAGATTTTCTGTATTCTTTTTCTTTCTGCTTGCGTGAGGATTGTGTTACGATATTTACCTTCATGGCTGTCTACGTATCAGGAGCTTCAATGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGGACACTCAAAACCCACCAGGCAAATAAAACAGCTTCTCGGACATTTGGCGCTCTGGATCCAGTGCAGGTTGCCATGATGGCCAAGTACTTGGATACAATCTATGTCTCTGGGTGGCAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATAGAAAACAGAGGGAGGCCAGAATGAGTATGAGCAGAGAAGAGAAGGCTAGGACACCTCATATTGACTACCTCAGGCCCATCATCGCAGATGGAGACACTGGTTTTGGTGGGACAACTGCAACAGTTAAGCTCTGTAAGCTCTTTGTAGAAAGGGGTGCAGCAGGCGTGCACATTGAGGATCAGGCCTCTGTGACAAAAAAGTGTGGTCACATGGCTGGCAAAGTCTTGGTTTCTACTGCAGAGCATATCAATAGGCTTGTGGCTGCCCGGTTGCAATTTGATATCATGGGAGTAGAGACTGTTCTCATAGCTAGAACGGATGCAGTAGCAGCAACTTTGATTCAGACCAATATTGATGGGAGAGACCATCCTTTTATTCTTGGGGTCACCAACCCCAAGCTTAAGGGAAGGCCTTTGGCTACTGTGCTGGCAGAAGCCATGGCTAATGGAAAAACTGGCACAGAGTTGCAAGATGTAGAGGATAAATGGATGGGTATGGCCAATTTGAGGTTGTTTTCTGACGTTGTAGGGGATGCTATTAGGAGCCTGGCTATCCCACAGCAAGAGAAGGCTAATAGGATCAATCTCTGGTTCAACAAGATTGATCAGCTCCCCCACTTTGAAGCCCGGGAACTGGCCGAGAAATTGGGGGTTTCTGATGTGTTTTGGGATTGGGATCTTCCTAGAACCAGAGAAGGGTTTTATAGGTTCCAAGGTTCCACCAAGGCTGCTATTGTCAGGGGTTGGGCTTTTGGACCCCATGCAGACCTAATTTGGATGGAGACATCAAGCCCCGACATGGTAGAATGTAAGGAGTTTGCAGAAGGGGTGAAATCAAAGCATCCAGACCTGATGTTGGCCTACAATCTGTCACCTTCTTTCAATTGGGATGCTTCTCGCATGAGCGATGAACAGATGATGAACTTCATTCCTCAGATAGCACAGTTGGGCTTTTGCTGGCAGTTCATCACTCTGGCTGGATTCCATGCCGATGCATTAGTCATCGACACCTTTGCAAGGGACTATGCCAAGAAGGGCATGCTAGCTTACGTCCAGCAGATTCAAAGACAAGAAAGGGCTAATGGGGTTGACACTCTCGCCCACCAGAAGTGGTCTGGTGCTAATTACTATGATACTCTTCTCAAGACTGTGCAGGGTGGGATCTCTGCCACTGCTGCAATGGGTAAAGGAGTAACTGAAGATCAATTCAAGGTAGATGCATGGAGTAGTGATGGAAGAACACTAGATCTGACTAACCATGGTGTGGTTGCCCGGGCCAGAATGTAATCTGTTCAGTTTGTCTGCTTGATAGTATATTCTAGATATGCATATTTTTATATTTAAGGTTATGAAAGAGCATGAGAGCAGGATGGATTCCTGTTGGACAATTTGATTGGTTGGACAATTTGATTCATCAGACTGGAGAAACTTCAATCCAGTTGCCATTTAATATTAGATTGCTATTCGGTTATTGCTGTTGGGTTTAATTTAGTGGAAGAGAGTATATTACAAAATTGTTGGGCAAACTTTTGCTGCTGCCTTAACAGCATGGAATTTGGCTATACACTGATGCCATCATTATTTCTCTTCTGTAAAAGCTTATTTTGCATCAATATTTATTGATCATCAATAAATTAGAATTTATTACTGTA

Ace file of the UniGene sp_v3.0_unigene44435

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Isocitrate lyase n=1 Tax=Pinus taeda RepID=Q41084_PINTA	-	-	93%
FL-Next	sp=Isocitrate lyase; Pinus taeda (Loblolly pine).	-	-	98%
Sma3	Isocitrate lyase	-	-	-

Source	Gene names
Sma3	ICL 12;

Source	GOs	Term	Type	e value	Identity
Sma3	isocitrate lyase activity	GO:0004451	Molecular Function	0.0	-
Sma3	carboxylic acid metabolic process	GO:0019752	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Isocitrate lyase	IPR006254	-	-
Sma3	Isocitrate lyase/phosphorylmutase	IPR000918	-	-
Sma3	Isocitrate lyase/phosphorylmutase, conserved site	IPR018523	-	-
Sma3	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21720.1	ICL isocitrate lyase chr3:7652789-7655873 REVERSE LENGTH=576	73%
RefSeq	Arabidopsis thaliana	NP_188809.2	isocitrate lyase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002310458.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q41084

Fln msg:

Fln protein: MAVYVSGASMMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQANKTASRTFGALDPVQVAMMAKYLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREEKARTPHIDYLRPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQASVTKKCGHMAGKVLVSTAEHINRLVAARLQFDIMGVETVLIARTDAVAATLIQTNIDGRDHPFILGVTNPKLKGRPLATVLAEAMANGKTGTELQDVEDKWMGMANLRLFSDVVGDAIRSLAIPQQEKANRINLWFNKIDQLPHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAIVRGWAFGPHADLIWMETSSPDMVECKEFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFHADALVIDTFARDYAKKGMLAYVQQIQRQERANGVDTLAHQKWSGANYYDTLLKTVQGGISATAAMGKGVTEDQFKVDAWSSDGRTLDLTNHGVVARARM*

Protein Length: 575

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGTGCCTGAGTTCCAGATTTTCTGTATTCTTTTTCTTTCTGCTTGCGTGAGGATTGTGTTACGATATTTACCTTC_-_ATGGCTGTCTACGTATCAGGAGCTTCAATGATGATGGACGAGGAAGCAAAAATTGAAGCAGAAGTAGCAGAGGTCCAAACATGGTGGAACTCAGAGCGATTTCGCCTCACACAGAGGCCATACACTGCAAAGGATGTAGTTCGTCTGAGAGGCACCATGCGCCAGAGCTATGCGTCCAATGAGCTGGCCAAAAAGCTATGGAGGACACTCAAAACCCACCAGGCAAATAAAACAGCTTCTCGGACATTTGGCGCTCTGGATCCAGTGCAGGTTGCCATGATGGCCAAGTACTTGGATACAATCTATGTCTCTGGGTGGCAGTGTTCTTCCACTCACACGTCCACAAATGAACCAGGCCCTGATCTTGCGGACTATCCCTATGACACTGTCCCTAACAAAGTGGAGCACCTCTTCTTTGCCCAGCAATATCACGATAGAAAACAGAGGGAGGCCAGAATGAGTATGAGCAGAGAAGAGAAGGCTAGGACACCTCATATTGACTACCTCAGGCCCATCATCGCAGATGGAGACACTGGTTTTGGTGGGACAACTGCAACAGTTAAGCTCTGTAAGCTCTTTGTAGAAAGGGGTGCAGCAGGCGTGCACATTGAGGATCAGGCCTCTGTGACAAAAAAGTGTGGTCACATGGCTGGCAAAGTCTTGGTTTCTACTGCAGAGCATATCAATAGGCTTGTGGCTGCCCGGTTGCAATTTGATATCATGGGAGTAGAGACTGTTCTCATAGCTAGAACGGATGCAGTAGCAGCAACTTTGATTCAGACCAATATTGATGGGAGAGACCATCCTTTTATTCTTGGGGTCACCAACCCCAAGCTTAAGGGAAGGCCTTTGGCTACTGTGCTGGCAGAAGCCATGGCTAATGGAAAAACTGGCACAGAGTTGCAAGATGTAGAGGATAAATGGATGGGTATGGCCAATTTGAGGTTGTTTTCTGACGTTGTAGGGGATGCTATTAGGAGCCTGGCTATCCCACAGCAAGAGAAGGCTAATAGGATCAATCTCTGGTTCAACAAGATTGATCAGCTCCCCCACTTTGAAGCCCGGGAACTGGCCGAGAAATTGGGGGTTTCTGATGTGTTTTGGGATTGGGATCTTCCTAGAACCAGAGAAGGGTTTTATAGGTTCCAAGGTTCCACCAAGGCTGCTATTGTCAGGGGTTGGGCTTTTGGACCCCATGCAGACCTAATTTGGATGGAGACATCAAGCCCCGACATGGTAGAATGTAAGGAGTTTGCAGAAGGGGTGAAATCAAAGCATCCAGACCTGATGTTGGCCTACAATCTGTCACCTTCTTTCAATTGGGATGCTTCTCGCATGAGCGATGAACAGATGATGAACTTCATTCCTCAGATAGCACAGTTGGGCTTTTGCTGGCAGTTCATCACTCTGGCTGGATTCCATGCCGATGCATTAGTCATCGACACCTTTGCAAGGGACTATGCCAAGAAGGGCATGCTAGCTTACGTCCAGCAGATTCAAAGACAAGAAAGGGCTAATGGGGTTGACACTCTCGCCCACCAGAAGTGGTCTGGTGCTAATTACTATGATACTCTTCTCAAGACTGTGCAGGGTGGGATCTCTGCCACTGCTGCAATGGGTAAAGGAGTAACTGAAGATCAATTCAAGGTAGATGCATGGAGTAGTGATGGAAGAACACTAGATCTGACTAACCATGGTGTGGTTGCCCGGGCCAGAATGTAA___TCTGTTCAGTTTGTCTGCTTGATAGTATATTCTAGATATGCATATTTTTATATTTAAGGTTATGAAAGAGCATGAGAGCAGGATGGATTCCTGTTGGACAATTTGATTGGTTGGACAATTTGATTCATCAGACTGGAGAAACTTCAATCCAGTTGCCATTTAATATTAGATTGCTATTCGGTTATTGCTGTTGGGTTTAATTTAGTGGAAGAGAGTATATTACAAAATTGTTGGGCAAACTTTTGCTGCTGCCTTAACAGCATGGAATTTGGCTATACACTGATGCCATCATTATTTCTCTTCTGTAAAAGCTTATTTTGCATCAATATTTATTGATCATCAATAAATTAGAATTTATTACTGTA

Fln Alignment:

CL5610Contig1___MAVYVSGASMMMDXXXXXXXXXXXXQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQANKTASRTFGALDPVQVAMMAKYLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREEKARTPHIDYLRPIIXXXXXXXXXXXXXVKLCKLFVERGAAGVHIEDQASVTKKCGHMAGKVLVSTAEHINRLVAARLQFDIMGVETVLIARTDAVAATLIQTNIDGRDHPFILGVTNPKLKGRPLATVLAEAMANGKTGTELQDVEDKWMGMANLRLFSDVVGDAIRSLAIPQQEKANRINLWFNKIDQLPHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAIVRGWAFGPHADLIWMETSSPDMVECKEFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFHADALVIDTFARDYAKKGMLAYVQQIQRQERANGVDTLAHQKWSGANYYDTLLKTVQGGISATAAMGKGVTEDQFKVDAWSSDGRTLDLTNHGVVARARM
Q41084_______________MAVYVQGASMMMDEEAKIEAEVAEVQTWWNSERFRLTQRPYTAKDVVRLRGTMRQSYASNELAKKLWRTLKTHQANKTASRTFGALDPVQVAMMAKYLDTIYVSGWQCSSTHTSTNEPGPDLADYPYDTVPNKVEHLFFAQQYHDRKQREARMSMSREERARTPHIDYLRPIIADGDTGFGGTTATVKLCKLFVERGAAGVHIEDQASVTKKCGHMAGKVLVSTAEHINRLVAARLQFDIMGVETVLIARTDAVAATLIQTNIDGRDHPFILGVTNPKLKGKPLATVLAEAMANGKTGTELQDVEDKWMGMANLRLFSDVVGDAIRSLAIPQQEKSNRINLWFNKIDQLSHFEARELAEKLGVSDVFWDWDLPRTREGFYRFQGSTKAAILRGWAFGPHADLIWMETSSPDMVECKRFAEGVKSKHPDLMLAYNLSPSFNWDASRMSDEQMMNFIPQIAQLGFCWQFITLAGFHADALVIDTFARDYAKKGMLAYVQQIQRQERANGVDTLAHQKWSGANYYDTLLKTVQGGISGTAAMGKGVTEDQFKADAWSSDGRALDLTNHGVVARARM

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain