SustainPineDB

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Assembly info
Unigenes
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44385

Length: 434 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene44385
TTGATCAATTTGTGCAAGTCTTTTTAGATGATATTCTCATCTATTCCAAGAATGAGAAAGAGCATGAAGATCATTTGCGAATAGTATTGTCCTGCCTTAGATAACGTCAGTTATATGGAAAACTATCCAAGTGTTCCTTCTTTCAGGAAAGGATTCATTATTTGGGTCACATCATATCAGGTGAAGGGATTTTCGTAGATCCTGAGAAGGTAAAAGCGATCATGGATTGGCCAATACCGAAAAATGCACATGAGATACGAAGCTTTATGGGTTTAGCCGGTTATTACCGAAGATTTGTGGAGGGATTCTCCAAAATCGCAAAGCCAATCACAACCCTTCAGCGTAAAGGTGTTAAGTATGAGTGGACCGAGGAATGTAATAAAGCATTCTCTGAACTAAAAAGACTACTTACCAGTGCACCAATCCTAAAAGTC

Ace file of the UniGene sp_v3.0_unigene44385 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RVT_1 domain containing protein	-	-	5.0e-09	29%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	47%
Sma3	Retrotransposon protein, putative, Ty3-gypsy subclass	-	-	0.0	-

Source	Gene names
Sma3	AT4g03650; B1168G10.5; F9D12.11; H0124E07.7; H0201G08.12; H0207B04.5; H0409D10.7; H0425E08.11; H0502G05.12; H0512B01.1; H0522A01.6; H0613A10.2; H0616A11.2; H0616A11.3; H0622G10.3; H0807C06-H0308C08.6; H0820C10.2; LOC_Os03g04860; LOC_Os03g21350; LOC_Os03g2

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	neuropeptide signaling pathway	GO:0007218	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Peptidase A2A, retrovirus, catalytic	IPR001995	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	FMRFamide-related peptide-like	IPR002544	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	ATMG00860.1	ORF158 DNA/RNA polymerases superfamily protein chrM:235916-236392 FORWARD LENGTH=158	7.0e-33	47%
RefSeq	Arabidopsis thaliana	NP_085542.1	hypothetical protein ArthMp075 (mitochondrion) [Arabidopsis thaliana]	9.0e-33	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 34 aas, W2: There is no M at the beginning,

Fln protein: DQFVQVFLDDILIYSKNEKEHEDHLRIVLSCLR*RQLYGKLSKCSFFQERIHYLGHIISGEGIFVDPEKVKAIMDWPIPKNAHEIRSFMGLAGYYRRFVEGFSKIAKPITTLQRKGVKYEWTEECNKAFSELKRLLTSAPILKV

Protein Length: 145

Fln nts: TTGATCAATTTGTGCAAGTCTTTTTAGATGATATTCTCATCTATTCCAAGAATGAGAAAGAGCATGAAGATCATTTGCGAATAGTATTGTCCTGCCTTAGATAACGTCAGTTATATGGAAAACTATCCAAGTGTTCCTTCTTTCAGGAAAGGATTCATTATTTGGGTCACATCATATCAGGTGAAGGGATTTTCGTAGATCCTGAGAAGGTAAAAGCGATCATGGATTGGCCAATACCGAAAAATGCACATGAGATACGAAGCTTTATGGGTTTAGCCGGTTATTACCGAAGATTTGTGGAGGGATTCTCCAAAATCGCAAAGCCAATCACAACCCTTCAGCGTAAAGGTGTTAAGTATGAGTGGACCGAGGAATGTAATAAAGCATTCTCTGAACTAAAAAGACTACTTACCAGTGCACCAATCCTAAAAGTC

Fln Alignment:

CL4924Contig1___DHLRIVLSCLR*RQLYGKLSKCSFFQERIHYLGH--IISGEGIFVDPEKVKAIMDWPIPKNAHEIRSFMGLAGYYRRFVEGFSKIAKPITTLQRKGVKYEWTEECNKAFSELKRLLTSAPIL
P92523_______________NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain