SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44382

Length: 1524 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene44382

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative DNA helicase [Arabidopsis thaliana]	-	-	0.0	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	20%
Sma3	DNA Helicase	-	-	4.028e-21	-

Source	Gene names
Sma3	At1g10930; At1g31360; At3g05740; At4g35740; At5g27680; CHLREDRAFT_128016; CHLREDRAFT_149083; CHLREDRAFT_170922; CHLREDRAFT_205526; DHC1_1; DHC2; F10A16.2; GSVIVT00007632001; GSVIVT00016418001; GSVIVT00022637001; GSVIVT00035462001; LOC_Os11g44910; LOC_Os11

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	four-way junction helicase activity	GO:0009378	Molecular Function	-
Sma3	3'-5' DNA helicase activity	GO:0043138	Molecular Function	-
Sma3	double-strand break repair via homologous recombination	GO:0000724	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	DNA recombination	GO:0006310	Biological Process	-
Sma3	chromosome organization	GO:0051276	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GNAT domain	IPR000182	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Helicase/RNase D C-terminal, HRDC domain	IPR002121	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Multicopper oxidase, copper-binding site	IPR002355	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	DNA helicase, ATP-dependent, RecQ type	IPR004589	-	-
Sma3	Copper resistance B precursor	IPR007939	-	-
Sma3	Cupredoxin	IPR008972	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Multicopper oxidase, type 2	IPR011706	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	DNA ligase, ATP-dependent, conserved site	IPR016059	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3		IPR018329	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G05740.1	RECQI1 RECQ helicase l1 chr3:1698180-1701228 FORWARD LENGTH=606	71%
RefSeq	Arabidopsis thaliana	NP_187225.2	ATP-dependent DNA helicase Q-like 1 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002330189.1	predicted protein [Populus trichocarpa]	74%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKZ7

Fln msg: your sequence is shorter than subject: 380 - 504

Fln protein: TGGGKSLCYQLPAVLSSGVTIVISPLLSLIQDQIITLVVKFAIPATFLNSQQTSAQALAIMKELRKVQPSCKLLYVTPEKIAGSSSFQEALKSLQEKGKLARFVIDEAHCVSQWGHDFRPDYRELGCLKQKFPNVPMMALTATATQAVRGDILKVLRIPHALVLETSFDRPNLSYEVILKNKDSLKQLGQTITERFNQQCGIVYCLSKNECMDVCKYLNDKFHVKTVYYHAGLAARGRMEVQKRWHSGEVQVVCATIAFGMGIDKSDVRFVIHNTMSKSIESYYQESGRAGRDNLTATCMVLYQKKDFSRIVCMLRLGQRCRNERFKLAMTQARKMQAYCEEKVQCRRQILLEYFGENYNRIKCKNGPNPCDSCLKWSK*

Protein Length: 381

Fln nts: CACTGGGGGTGGGAAAAGCTTATGCTATCAGCTCCCTGCAGTTCTGTCTTCGGGGGTGACAATTGTAATATCACCCCTACTTTCCCTTATTCAAGACCAAATTATTACGTTGGTTGTTAAATTTGCCATACCAGCAACATTCTTGAACTCTCAACAGACAAGTGCCCAAGCTTTGGCCATTATGAAAGAACTAAGGAAAGTTCAACCATCATGCAAGTTATTGTATGTGACTCCCGAAAAGATTGCTGGCAGCTCATCATTTCAAGAGGCTCTAAAATCATTGCAGGAAAAGGGAAAGCTTGCACGATTTGTTATTGATGAAGCACATTGTGTTAGCCAATGGGGTCATGACTTCCGACCTGATTATAGGGAATTAGGATGCTTGAAGCAGAAATTTCCAAATGTGCCGATGATGGCTCTCACAGCCACTGCAACTCAAGCAGTACGAGGGGACATATTGAAAGTTCTCAGGATACCCCATGCTCTGGTGCTTGAAACAAGTTTTGATCGTCCCAATCTCTCCTATGAGGTTATCCTTAAAAACAAAGACTCTTTAAAGCAGCTTGGGCAAACAATTACAGAACGTTTCAACCAACAGTGTGGAATTGTGTACTGCCTATCCAAAAATGAGTGTATGGATGTTTGCAAATACTTAAATGACAAGTTTCATGTGAAGACGGTATACTACCATGCAGGGCTTGCAGCCCGTGGGAGAATGGAAGTACAGAAAAGGTGGCATAGTGGTGAGGTGCAGGTGGTTTGTGCTACTATTGCATTTGGAATGGGCATAGACAAATCTGATGTAAGGTTTGTGATCCACAATACAATGTCCAAATCAATTGAAAGTTATTATCAAGAGTCTGGAAGAGCTGGCAGAGACAATCTTACAGCAACATGCATGGTCCTGTACCAAAAGAAGGATTTCAGTCGGATAGTTTGCATGCTACGACTTGGACAACGATGCAGGAATGAACGATTTAAGCTTGCAATGACACAAGCCAGGAAGATGCAAGCTTATTGTGAAGAAAAGGTCCAATGCAGAAGACAGATTCTTCTCGAATATTTTGGTGAGAACTATAATAGGATCAAATGCAAGAATGGGCCCAATCCGTGTGATAGTTGCCTTAAATGGTCTAAGTAA___CTTTTTAGATTACGATATATATCATTTATTCAATATAGATATTCTTTATTCTTTACCAAATCTTTTAATGCTAAATAATTATAATTTAGCTTCACTTTTGTATCAAGGTTTTAGTGGTATCATGAGGCTCCCTTGTTTGCTTCGCTATATATAGGCTAGAAAGATAAATCATTGTTTATATCGGTATTTCGTTTAGTTTATTTATGTGGATATTTAATTAATTTAATTGGATATTCCACTTATCCACTTATAGAGCTCCAAACGTATACCACACAATAGGCAGGAGACTAAGATGAAGAGTGCCTGTAAAATCAATTATTGCTTATGGCCGTCAGCATGTGGTCAAGTTGCATTCTTATTTTCCGAGACAATTTGATTATATA

Fln Alignment:

CL4851Contig1___TGGGKSLCYQLPAVL-----------SSGVTIVISPLLSLIQDQIITLVVKFAIPATFLNSQQTSAQALAIMKELRKVQPSCKLLYVTPEKIAGSSSFQEALKSLQEKGKLARFVIDEAHCVSQWGHDFRPDYRELGCLKQKFPNVPMMALTATATQAVRGDILKVLRIPHALVLETSFDRPNLSYEVILK---NKDSLKQLGQTITERFNQQCGIVYCLSKNECMDVCKYLN-DKFHVKTVYYHAGLAARGRMEVQKRWHSGEVQVVCATIAFGMGIDKSDVRFVIHNTMSKSIESYYQESGRAGRDNLTATCMVLY
B8LKZ7_______________TGSGKTLAYLLPAIVHVNAQPYLAPGDGPIVLVLAPTRELAV-QIQQEAAKFGASSKIKNTCIYGGAPKG--PQVRDLSKGVEIVIATPGRLIDMLESQHT-----NLRRVTYLVLDEADRMLDMG--FEPQIKKI--VSQIRPDRQTLYWSATWPKEVELLARQSLHNPYKVIIGSSDLKANHAIEQIVEIVSEHEKYTRLIQLLEEIMDGSRLLIFLETKKGCDQVTRKLRMDGWPALSI--HGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDIKCVINYDFPGSMEDYVHRIGRTGRAGAKGTAYTYF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain