SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44300

Length: 535 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene44300
TCTGAAACCTAAAAAGGATTATTGGCACCATGCAGGCGGGCAATGGGTATTGTGCGTCTCCTCTATGGCATTTGGGTTTCTGAGATTAACAGTTCATGCTTGAGGTGGGGTGTGAAAATCCCATAACTTCAAGTTATAGAGCTGTTGGCTCTGAGCACCATGGATCCCTTAATTATGAAAAGTATGGAGGCAGAGTTAGACAAACTACCCAGCAAAGGAAATTTTCAGGCTCCTGATCTGCGCAAAGTATTCCAAACTTTATTCAAAGGCAGATCATTTAGAGAGTTTACCAGTGGAGCTTTGTCCGGGGCCATGGCTAAAACTGCAGTGGGTCCTTTGGAAACTATCCGGACAAGGATGATCGTAGGTGTTGGTTCAAAGAACATTGTTGGGAGTTTTAAAGAGGTGATGAAAGAACAAGGCTGGAAAGGGCTGTGGGCTGGCAATGGCATTAATCTACTTCGGATAGTTCCTACCCAAGCAATTGAGCTTTGCACATTTGAATCTACAAAACGATTTTTAACATCTGTCCAAG

Ace file of the UniGene sp_v3.0_unigene44300 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	mitochondrial carrier protein, putative [Arabidopsis thaliana]	-	-	1.0e-29	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	30%

Source	Gene names
Sma3	At3g20240; GSVIVT00029607001; OJ1003_A09.8; Os08g0520000; Os09g0497000; OsI_29910; OsJ_27959; OsJ_29880; P0689E12.32; PHYPADRAFT_187346; POPTRDRAFT_655635; RCOM_1573670; VITISV_024610;

Source	GOs	Term	Type	Identity
Sma3	mitochondrial inner membrane	GO:0005743	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G20240.1	Mitochondrial substrate carrier family protein chr3:7057192-7058716 FORWARD LENGTH=348	1.0e-36	64%
RefSeq	Arabidopsis thaliana	NP_188659.1	Mitochondrial substrate carrier family protein [Arabidopsis thaliana]	1.0e-36	64%
RefSeq	Populus trichocarpa	XP_002311894.1	predicted protein [Populus trichocarpa]	2.0e-40	62%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX45

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 197 aas, your sequence is shorter than subject: 178 - 511

Fln protein: SET*KGLLAPCRRAMGIVRLLYGIWVSEINSSCLRWGVKIP*LQVIELLALSTMDPLIMKSMEAELDKLPSKGNFQAPDLRKVFQTLFKGRSFREFTSGALSGAMAKTAVGPLETIRTRMIVGVGSKNIVGSFKEVMKEQGWKGLWAGNGINLLRIVPTQAIELCTFESTKRFLTSVQ

Protein Length: 179

Fln nts: TCTGAAACCTAAAAAGGATTATTGGCACCATGCAGGCGGGCAATGGGTATTGTGCGTCTCCTCTATGGCATTTGGGTTTCTGAGATTAACAGTTCATGCTTGAGGTGGGGTGTGAAAATCCCATAACTTCAAGTTATAGAGCTGTTGGCTCTGAGCACCATGGATCCCTTAATTATGAAAAGTATGGAGGCAGAGTTAGACAAACTACCCAGCAAAGGAAATTTTCAGGCTCCTGATCTGCGCAAAGTATTCCAAACTTTATTCAAAGGCAGATCATTTAGAGAGTTTACCAGTGGAGCTTTGTCCGGGGCCATGGCTAAAACTGCAGTGGGTCCTTTGGAAACTATCCGGACAAGGATGATCGTAGGTGTTGGTTCAAAGAACATTGTTGGGAGTTTTAAAGAGGTGATGAAAGAACAAGGCTGGAAAGGGCTGTGGGCTGGCAATGGCATTAATCTACTTCGGATAGTTCCTACCCAAGCAATTGAGCTTTGCACATTTGAATCTACAAAACGATTTTTAACATCTGTCCAAG

Fln Alignment:

CL3769Contig1___SGALSGAMAKTAVGPLETIRTRMIVGVGSKNIVGSFKEVMKEQGWKGLWAGNGINLLRIVPTQAIELCTFESTKRFLTSV
A9NX45_______________AGGVAGALSRTATAPLDRLKVILQVQTSGAHVIPAINNIFREGGLKGFFRGNGINVLKVAPESAIKFFAYEMMKNFVVNI

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain