SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44124

Length: 1987 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene44124
ATCCAGAATGAATATTCAATAGATTCTTTGATGCACAAACAAACAGATATCTGATCCAGTGCTCAGATGGATGTGAACGCAGAGCAGTCATCACGAGTGAATTTGCTGGAAAATCAAGATGATCAACCTCTCCTGCCACTAGAGGAGGGCCAAGAAGGGGAACACACTGGGGATGGCTCTGTGGATATCCATGGAAGGCCGTCTGTGAGGCAAAACACAGGCAATTGGAGAGCTTGCCCATTTGTTTTAGGGAATGAGTGCTGTGAGCGACTGGCATACTATGGTATTAACATAAATTTGGTGACTTATTTGATTACAAAATTACATGAGGGGAATGCGGATGCTGCAAAGACTGTGAACATTTGGTCAGGCACGTGCTATCTCACTCCACTTTTTGGGGCAGTTTTGGCTGATGCATACTGGGGCCGATACTGGACAATTGCTGTTTTCTCAACAATTTACTTTATTGGAATGGCAACCTTGACAATTTCAGCCACTGTTTCTGCCTTGCAACCTCCATCCTGCACAGACAGTGTCTGCCCAAAGGCAACAACACTTGAATATGCTGTATTTTTCCTTGGACTTTACCTTATTGCATTAGGAACTGGAGGCATCAAACCCTGTGTGTCTTCTTTTGGGGCTGACCAGTTCGATGACACCAATCCAACAGAAAGGAAGAAGAAGGGCTCTTTCTTCAATTGGTTTTACTTCTCAATTAATGTTGGGGCTCTTGTTTCCAGCAGCGTTATTGTATGGGTCCAAGACAATGTTGGTTGGGGATGGGGTTTTGCCATCCCTACCATTTTTATGGGATTAGCCATAATAAGTTTTTTTTCTGGGACACCATTATATAGACTCCAAAAACCTGGAGGCAGTCCCCTCACACGGTTATGCCAAGTAATAGTTGCATCATTGCGTAAATTGCAAAAGGAAGTCCCTCAAGATAGTTCAATGCTGTACGAGGTGCAGGACAAGCGTTCTGTTATTCAAGGAAGCCGAAAGATAGAGCATACAAATGATCTCAATTGTCTTGACAAAGCAGCTATAATAACAGATGATGATATTCGGGACAGTGGATTTTCCAATGCTTGGAAACTATGTACTGTAACCCAAGTGGAGGAGCTGAAGATTTTGGTCCGTATGTTTCCCATATGGGTGAGTGGTGTTGTGTTTTCTGCTTTTTATGCTCAAATGTCAACGGTGTTTGTCGAACAGGGCATGACCATGGACACCAGCATTGGTTCCTTCGAAATTCCTGCAGCATCATTGTCTATATTTGATATACTGAGTGTCATGATATGGGTTCCAGTTTATGATCGCATAATTGTGCCTATTGCTCGCAAGTACACTGGAAAAGAAAGGGGGCTTACTGAGCTGCAACGGATGGGTATTGGGCTGGTCATATCAATAATTTCTATGACAGCAGCTGCCTTAGTTGAAATCAAGCGTTTGGATATTGTCAGAACTCTGGATTTGGTCCATGATACAGTCACACCAGTTCCCATGACCATTTTTTGGCAAGTTCCCCAGTATTTCTTAATTGGTGCTGCAGAAATTTTTTTCTTTATAGGGCAGCTGGAGTTTTTCTATGATCAGTCTCCTGATGCAATGCGCAGCTTGTGCAGTGCTCTTTATCTTCTTACAACATCATTAGGAAGCTATTTGAGCACCTTAATTGTTACTATTGTTACTTCTATCACCACTAAAGGAGGAAAACAGGGATGGATACCTGACAATCTCAATGAAGGCCATTTAGACTATTACTTTTGGCTTTTAGCTTCCCTTAGCTTTCTGAACTTGTTGATATACATCGCTTGTGTACGCAGATACCAGTACAAGAAGGCCAACTGGGGCTAAATTCCAAATTATATGTGTGATGCATTACAGTTATCCATGAGTCATTTCTCTCTACCGTGTTTAGTTGAATGTAATCACCTTTATCACTGTTACAGTCCCAGATATAGTGGTGATAATACTAGTTTTTCAT

Ace file of the UniGene sp_v3.0_unigene44124 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Peptide transporter n=1 Tax=Hakea actites RepID=A6YJX4_9MAGN	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Oligopeptide transporter	IPR000109	-	0.0	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G02040.1	ATPTR2-B, NTR1, PTR2-B, PTR2, ATPTR2 peptide transporter 2 chr2:487542-489707 FORWARD LENGTH=585	67%
RefSeq	Arabidopsis thaliana	NP_178313.1	peptide transporter PTR2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002315835.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg:

Fln protein: MDVNAEQSSRVNLLENQDDQPLLPLEEGQEGEHTGDGSVDIHGRPSVRQNTGNWRACPFVLGNECCERLAYYGININLVTYLITKLHEGNADAAKTVNIWSGTCYLTPLFGAVLADAYWGRYWTIAVFSTIYFIGMATLTISATVSALQPPSCTDSVCPKATTLEYAVFFLGLYLIALGTGGIKPCVSSFGADQFDDTNPTERKKKGSFFNWFYFSINVGALVSSSVIVWVQDNVGWGWGFAIPTIFMGLAIISFFSGTPLYRLQKPGGSPLTRLCQVIVASLRKLQKEVPQDSSMLYEVQDKRSVIQGSRKIEHTNDLNCLDKAAIITDDDIRDSGFSNAWKLCTVTQVEELKILVRMFPIWVSGVVFSAFYAQMSTVFVEQGMTMDTSIGSFEIPAASLSIFDILSVMIWVPVYDRIIVPIARKYTGKERGLTELQRMGIGLVISIISMTAAALVEIKRLDIVRTLDLVHDTVTPVPMTIFWQVPQYFLIGAAEIFFFIGQLEFFYDQSPDAMRSLCSALYLLTTSLGSYLSTLIVTIVTSITTKGGKQGWIPDNLNEGHLDYYFWLLASLSFLNLLIYIACVRRYQYKKANWG*

Protein Length: 598

Fln nts: ATCCAGAATGAATATTCAATAGATTCTTTGATGCACAAACAAACAGATATCTGATCCAGTGCTCAG_-_ATGGATGTGAACGCAGAGCAGTCATCACGAGTGAATTTGCTGGAAAATCAAGATGATCAACCTCTCCTGCCACTAGAGGAGGGCCAAGAAGGGGAACACACTGGGGATGGCTCTGTGGATATCCATGGAAGGCCGTCTGTGAGGCAAAACACAGGCAATTGGAGAGCTTGCCCATTTGTTTTAGGGAATGAGTGCTGTGAGCGACTGGCATACTATGGTATTAACATAAATTTGGTGACTTATTTGATTACAAAATTACATGAGGGGAATGCGGATGCTGCAAAGACTGTGAACATTTGGTCAGGCACGTGCTATCTCACTCCACTTTTTGGGGCAGTTTTGGCTGATGCATACTGGGGCCGATACTGGACAATTGCTGTTTTCTCAACAATTTACTTTATTGGAATGGCAACCTTGACAATTTCAGCCACTGTTTCTGCCTTGCAACCTCCATCCTGCACAGACAGTGTCTGCCCAAAGGCAACAACACTTGAATATGCTGTATTTTTCCTTGGACTTTACCTTATTGCATTAGGAACTGGAGGCATCAAACCCTGTGTGTCTTCTTTTGGGGCTGACCAGTTCGATGACACCAATCCAACAGAAAGGAAGAAGAAGGGCTCTTTCTTCAATTGGTTTTACTTCTCAATTAATGTTGGGGCTCTTGTTTCCAGCAGCGTTATTGTATGGGTCCAAGACAATGTTGGTTGGGGATGGGGTTTTGCCATCCCTACCATTTTTATGGGATTAGCCATAATAAGTTTTTTTTCTGGGACACCATTATATAGACTCCAAAAACCTGGAGGCAGTCCCCTCACACGGTTATGCCAAGTAATAGTTGCATCATTGCGTAAATTGCAAAAGGAAGTCCCTCAAGATAGTTCAATGCTGTACGAGGTGCAGGACAAGCGTTCTGTTATTCAAGGAAGCCGAAAGATAGAGCATACAAATGATCTCAATTGTCTTGACAAAGCAGCTATAATAACAGATGATGATATTCGGGACAGTGGATTTTCCAATGCTTGGAAACTATGTACTGTAACCCAAGTGGAGGAGCTGAAGATTTTGGTCCGTATGTTTCCCATATGGGTGAGTGGTGTTGTGTTTTCTGCTTTTTATGCTCAAATGTCAACGGTGTTTGTCGAACAGGGCATGACCATGGACACCAGCATTGGTTCCTTCGAAATTCCTGCAGCATCATTGTCTATATTTGATATACTGAGTGTCATGATATGGGTTCCAGTTTATGATCGCATAATTGTGCCTATTGCTCGCAAGTACACTGGAAAAGAAAGGGGGCTTACTGAGCTGCAACGGATGGGTATTGGGCTGGTCATATCAATAATTTCTATGACAGCAGCTGCCTTAGTTGAAATCAAGCGTTTGGATATTGTCAGAACTCTGGATTTGGTCCATGATACAGTCACACCAGTTCCCATGACCATTTTTTGGCAAGTTCCCCAGTATTTCTTAATTGGTGCTGCAGAAATTTTTTTCTTTATAGGGCAGCTGGAGTTTTTCTATGATCAGTCTCCTGATGCAATGCGCAGCTTGTGCAGTGCTCTTTATCTTCTTACAACATCATTAGGAAGCTATTTGAGCACCTTAATTGTTACTATTGTTACTTCTATCACCACTAAAGGAGGAAAACAGGGATGGATACCTGACAATCTCAATGAAGGCCATTTAGACTATTACTTTTGGCTTTTAGCTTCCCTTAGCTTTCTGAACTTGTTGATATACATCGCTTGTGTACGCAGATACCAGTACAAGAAGGCCAACTGGGGCTAA___ATTCCAAATTATATGTGTGATGCATTACAGTTATCCATGAGTCATTTCTCTCTACCGTGTTTAGTTGAATGTAATCACCTTTATCACTGTTACAGTCCCAGATATAGTGGTGATAATACTAGTTTTTCAT

Fln Alignment:

CL1009Contig1___HTGDGSVDIHGRPSVRQNTGNWRACPFVLGNECCERLAYYGININLVTYLITKLHEGNADAAKTVNIWSGTCYLTPLFGAVLADAYWGRYWTIAVFSTIYFIGMATLTISATVSALQPPSCTDSVCPKATTLEYAVFFLGLYLIALGTGGIKPCVSSFGADQFDDTNPTERKKKGSFFNWFYFSINVGALVSSSVIVWVQDNVGWGWGFAIPTIFMGLAIISFFSGTPLYRLQKPGGSPLTRLCQVIVASLRKLQKEVPQDSSMLYEVQDKRSVIQGSRKIEHTNDLNCLDKAAIITDDDIRDSGFSNAWKLCTVTQVEELKILVRMFPIWVSGVVFSAFYAQMSTVFVEQGMTMDTSIGS-FEIPAASLSIFDILSVMIWVPVYDRIIVPIARKYTGKERGLTELQRMGIGLVISIISMTAAALVEIKRLDIVRTLDLVHDTVTPVPMTIFWQVPQYFLIGAAEIFFFIGQLEFFYDQSPDAMRSLCSAXXXXXXXXXXXXXXXXXXXXXXXXTKGGKQGWIPDNLNEGHLDYYFWXXXXXXXXXXLIYIACVRRYQYKKAN
A9NVR2_______________YTGDGSVDFWGRPSVKENTGNWRACPFILGNECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAFSTIYFIGMATLTLSASVSSLKPPSCIGSDCPTANLAQYGVFFLGLYLIALGTGGIKPCVSSFGADQFDDTDPKEKKKKGSFFNWFYFSINVGALVSSSVLVWVQDNVGWGWGFGIPTLFMGLAIGSFFSGTPLYRLQKPGGSPVTRMCQVVVASLRKLRKTVPLDHSHLYEVQDRNSAIQGSRKLEHTDEFKCLDKSAIITDDDVRKGGFSNPWRLCTVTQVEEMKILLRMFPIWATGIVFAAVYSQISTMFVEQGMTLDTSIGSRFHIPPASLSVFDVVSVMIWVPVYDRVIVPIVSKYTKRERGFTELQRMGIGLFISILAMVAAALVEIRRLNIVKTYDLVYDKGTPVPMSIFWQIPQYFLVGASEVFTFVGQLEFFYDQSPDAMRSLCSALSLLTTALGNYLSSLIVTIVMFATTKGGNIGWIPDNLNEGHLDYYFWVLASLSVLNLLVYVSCAHRYKYKKAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain