SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene44052

Length: 2028 nt

UniGene Fasta

>sp_v3.0_unigene44052
GTTTACATTGTTGCTTTAGGAATGCAACGCAACTCTGATACCAGATGATGTAGAAACTTTGTAATAAACAGAAATAAGTAAATATGTTATTAATAATTGAATGATGATGATTGCATTTTTGTGAGAGGCCCGGGCTATATACTGCCTTAGGTACCTCTTGGTGAAAGATCATGCCCTTTTGCTTAATAAACTACACTAACTAATTTTTACATAACACCCTCACATGTGCAAATTGATCAAGTCGGCTTCATCATTATGTAGGCTCAGGAAGCCCAATGGATGTGTCTCTTCACCCACAACAAAGTGTATAAATACAAGAGACCTCACACCTCATTTGGGCATCCATCACTCACATTCTTCTCTCTCTTGATCAGATTGGTTTGTACAGCTTGGGGCAACCTCTCTCTCTCCTACTTGCGGCTAGGAGGACAGAATTTCTGGGCAGTAATTACAGGCCGAATTTCAGACTTCAGGAATAGGTTTGACTAGCGTTGACCAAGGTGCATTTGACTGCAGGTCAAAGATTTGATTTTCTCAGGCCACATTGCTGGGCACTAAAATCGAGGAATTCTGTGTTGGTTGACCTACATTGACTTCAGGTTTGACTATTGTTTTACCTCAAAAAATTACAATAGTCTTCTCTCTCCTTTGACTGAGCTATTTTGGGCTGAATTTATCCTCTTGATTAGGTTGAGTTTGACCAAGGAAGGTCGAGTTGCTTTGAGGAAGATTTGTTGCTGTTTTGACCAGTGTTGACTTTCAAGTTAGGGCTGAAGTTTGACTGTAAAAATTTACAGGGCTGTTTTGACTGTGTATTGGGCAAGTCAATTTGACTTTTGTACTCTCTCTCTCTGTTGAACTTTTGATTTAATAATAACAAGAATTGATCGAAGGGTTTTCCCCACACTGGGGTTTTTCTTGGGCATCCTCCAAATCTGGTGTCCTCTTGTCTTGGCTTGTCTTCTATAGTTTATTTTATGTTCTATCTGCCTTTATTGTCAATGTGATTATTGTGATTGCAATTGGAAATTGTTATTGGGCTACTAAAGGAACATTGAAGTAATTTGTGCTAAGCATAGAACATACCATTGTTAACTAAAATTAACATGGTATCAGAGCCCAAGTGAAGACAAAGCCCAAGCAAGAGTGAGAAAAGCAATCACTAAGGAAAGTTGTTGGACAAGAATATTGTTCTAGCTTCAATGATGACTACATCATACTTCAAATCCGAGGACAATCTCAAGGACAAATCCGACTATCATGCATGGAAGGTGTCTCTGGATTTGACTTTGGAAGAGAATGATGCTATGGACTATGTAAAAGGGAAGAGTGGTGGAGCCTCCTTCAAATGCACCCACTGTTGCAAAAGCAAAGTACAAGAAAGGTGAAGTCAAAGCTAAGAAAATTATTGTAGATTCCGTTCACAAGCCTTTGGTTGCCTCTATTTTTGATTTGGAAACATCTAAGGAGATGTGTGATAAGCTGGTTGGGATGTTCAAAGTAAATAATGCAAATCAAGTTCTCTTTCTCAAGAACAAGTTGAAGGACATCAAGATGGATAGAGGAGAGTCCATTTAATCCTACTTCATAGGGATTACCAAAATCAAGAATGATCTCCTATCTATTGGAGAAATTGTTGGTGACAAGGAGCTCACTCTTATTGCACTTGGAGGCCTTACAAGAGAATGGGATGTGTTTAACACCACCATCCTCAACAATGACAGGATTATGGGATTTGATGAATTATTGGCTACATGCACTCAAGAAGAAATAAGGATGATGGAAAGAGATAAGCCCTCAAATGGAAATAATCCTACCGCTTTCTCCGCTCATTCTAAGAGAAAGAACAACGCTGGTCCAAGAAGACAAGGTCAAGGGTTTAAGTCGGATTCAAAGAAGGAAGAAAAAGAAGATGCTTCAATTGCAACGAGTTTGGCCACTTTGCTAAAGAGTGTCCTCACAAGAAGGATACTCCAAGGGATGATGACAACAATAGCAACAACTACAACGACAATGGCAATCAAAGGA

Ace file of the UniGene sp_v3.0_unigene44052

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein-like n=1 Tax=Solanum chilense RepID=Q9AU17_SOLCI	-	-	3.0e-06	25%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Y5

Fln msg: STOP codon was not found. Distance to subject end: 77 aas, W1: There is no M at the beginning, your sequence is longer than subject: 236 - 133

Fln protein: KGRVVEPPSNAPTVAKAKYKKGEVKAKKIIVDSVHKPLVASIFDLETSKEMCDKLVGMFKVNNANQVLFLKNKLKDIKMDRGESI*SYFIGITKIKNDLLSIGEIVGDKELTLIALGGLTREWDVFNTTILNNDRIMGFDELLATCTQEEIRMMERDKPSNGNNPTAFSAHSKRKNNAGPRRQGQGFKSDSKKEEKEDASIATSLATLLKSVLTRRILQGMMTTIATTTTTMAIKG

Protein Length: 237

Fln nts: GTTTACATTGTTGCTTTAGGAATGCAACGCAACTCTGATACCAGATGATGTAGAAACTTTGTAATAAACAGAAATAAGTAAATATGTTATTAATAATTGAATGATGATGATTGCATTTTTGTGAGAGGCCCGGGCTATATACTGCCTTAGGTACCTCTTGGTGAAAGATCATGCCCTTTTGCTTAATAAACTACACTAACTAATTTTTACATAACACCCTCACATGTGCAAATTGATCAAGTCGGCTTCATCATTATGTAGGCTCAGGAAGCCCAATGGATGTGTCTCTTCACCCACAACAAAGTGTATAAATACAAGAGACCTCACACCTCATTTGGGCATCCATCACTCACATTCTTCTCTCTCTTGATCAGATTGGTTTGTACAGCTTGGGGCAACCTCTCTCTCTCCTACTTGCGGCTAGGAGGACAGAATTTCTGGGCAGTAATTACAGGCCGAATTTCAGACTTCAGGAATAGGTTTGACTAGCGTTGACCAAGGTGCATTTGACTGCAGGTCAAAGATTTGATTTTCTCAGGCCACATTGCTGGGCACTAAAATCGAGGAATTCTGTGTTGGTTGACCTACATTGACTTCAGGTTTGACTATTGTTTTACCTCAAAAAATTACAATAGTCTTCTCTCTCCTTTGACTGAGCTATTTTGGGCTGAATTTATCCTCTTGATTAGGTTGAGTTTGACCAAGGAAGGTCGAGTTGCTTTGAGGAAGATTTGTTGCTGTTTTGACCAGTGTTGACTTTCAAGTTAGGGCTGAAGTTTGACTGTAAAAATTTACAGGGCTGTTTTGACTGTGTATTGGGCAAGTCAATTTGACTTTTGTACTCTCTCTCTCTGTTGAACTTTTGATTTAATAATAACAAGAATTGATCGAAGGGTTTTCCCCACACTGGGGTTTTTCTTGGGCATCCTCCAAATCTGGTGTCCTCTTGTCTTGGCTTGTCTTCTATAGTTTATTTTATGTTCTATCTGCCTTTATTGTCAATGTGATTATTGTGATTGCAATTGGAAATTGTTATTGGGCTACTAAAGGAACATTGAAGTAATTTGTGCTAAGCATAGAACATACCATTGTTAACTAAAATTAACATGGTATCAGAGCCCAAGTGAAGACAAAGCCCAAGCAAGAGTGAGAAAAGCAATCACTAAGGAAAGTTGTTGGACAAGAATATTGTTCTAGCTTCAATGATGACTACATCATACTTCAAATCCGAGGACAATCTCAAGGACAAATCCGACTATCATGCATGGAAGGTGTCTCTGGATTTGACTTTGGAAGAGAATGATGCTATGGACTATGTAAAAGGGAAGAGTGGTGGAGCCTCCTTCAAATGCACCCACTGTTGCAAAAGCAAAGTACAAGAAAGGTGAAGTCAAAGCTAAGAAAATTATTGTAGATTCCGTTCACAAGCCTTTGGTTGCCTCTATTTTTGATTTGGAAACATCTAAGGAGATGTGTGATAAGCTGGTTGGGATGTTCAAAGTAAATAATGCAAATCAAGTTCTCTTTCTCAAGAACAAGTTGAAGGACATCAAGATGGATAGAGGAGAGTCCATTTAATCCTACTTCATAGGGATTACCAAAATCAAGAATGATCTCCTATCTATTGGAGAAATTGTTGGTGACAAGGAGCTCACTCTTATTGCACTTGGAGGCCTTACAAGAGAATGGGATGTGTTTAACACCACCATCCTCAACAATGACAGGATTATGGGATTTGATGAATTATTGGCTACATGCACTCAAGAAGAAATAAGGATGATGGAAAGAGATAAGCCCTCAAATGGAAATAATCCTACCGCTTTCTCCGCTCATTCTAAGAGAAAGAACAACGCTGGTCCAAGAAGACAAGGTCAAGGGTTTAAGTCGGATTCAAAGAAGGAAGAAAAAGAAGATGCTTCAATTGCAACGAGTTTGGCCACTTTGCTAAAGAGTGTCCTCACAAGAAGGATACTCCAAGGGATGATGACAACAATAGCAACAACTACAACGACAATGGCAATCAAAGGA

Fln Alignment:

CL74Contig3___IIVDSVHKPLVASIFDLETSKEMCDKLVGMFKVNNANQVLFLKNKLKDIKMDRGESI*SYFIGITKIKNDLLSIGEIVGDKELTLIALGGLTREWDVFNTTILNNDRIMGFDELLATCTQEEIRMMERDK
D5A8Y5_______________IIVDSIKDHLIPYISHFDSSKKMYDALTNLLSVRNIGLVMSLKNEPRDMKMNEDDIITSYFVRISQLRDQLQAIEEIISEKELVNIVLNGLPKTWDAFAASMNTRKEYLTFEELWTCCAQEESRINAKEK

SSRs (tot: 1)

Start position	End position	Sequence	Length
842	853	CT CT CT CT CT CT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain