SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43577

Length: 242 nt

UniGene Fasta

>sp_v3.0_unigene43577
CAGACTCCTGTTCAGATGTTCGTATTGAGGACTGCTATGTAGTCTCTGGTGATGATGTAGTCGCAATAAAGAGTGGGTGGGATGAATACGGAATTTCCTTTAACATGCCCAGCCAACATATTGTCATCCGTCGTCTTGTTGGCATCTCACCCACAAGTGCAATAATTGCACTAGGCAGTGAAATGTCAGGTGGAATTCAAGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCA

Ace file of the UniGene sp_v3.0_unigene43577

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glycoside hydrolase, family 28 n=3 Tax=Andropogoneae RepID=B6TXJ8_MAIZE	-	-	2.0e-32	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Sma3	Polygalacturonase, putative	-	-	2.512e-17	-

Source	ECs	Term	Type	e value	Identity
Sma3	Polygalacturonase.	EC:3.2.1.15	-	4.943e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Pentose and glucuronate interconversions	00040	4.943e-14	%
Sma3	Starch and sucrose metabolism	00500	4.943e-14	%
Sma3	Metabolic pathways	01100	4.943e-14	%

Source	Gene names
Sma3	6J23.27; 8F2.19; AT3g62110/T17J13_70; AT4g23500; AT4g23820; AT4g33440; At1g19170; At2g23900; At3g48950; At3g61490; At3g62110; At4g23500; At4g23820; At4g23820/F9D16.290; At4g33440; At5g41870; B1040D09.13-1; B1040D09.13-2; F16G20.200; F17M5.200; F2A19.90; F

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	cellular cell wall organization	GO:0007047	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61490.1	Pectin lyase-like superfamily protein chr3:22758439-22760137 FORWARD LENGTH=476	1.0e-35	72%
RefSeq	Arabidopsis thaliana	NP_001190154.1	polygalacturonase-like protein [Arabidopsis thaliana]	1.0e-35	72%
RefSeq	Populus trichocarpa	XP_002299511.1	predicted protein [Populus trichocarpa]	1.0e-37	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: Distance to subject end: 155 aas, your sequence is shorter than subject: 80 - 472

Fln protein: DSCSDVRIEDCYVVSGDDVVAIKSGWDEYGISFNMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIHAINSEA

Protein Length: 81

Fln nts: CAGACTCCTGTTCAGATGTTCGTATTGAGGACTGCTATGTAGTCTCTGGTGATGATGTAGTCGCAATAAAGAGTGGGTGGGATGAATACGGAATTTCCTTTAACATGCCCAGCCAACATATTGTCATCCGTCGTCTTGTTGGCATCTCACCCACAAGTGCAATAATTGCACTAGGCAGTGAAATGTCAGGTGGAATTCAAGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCA

Fln Alignment:

CL17645Contig1___DSCSDVRIEDCYVVSGDDVVAIKSGWDEYGISFNMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIHAINSE
B8LQW0_______________DSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain