SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43473

Length: 249 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene43473
GTTATGTGAATATACAAGGGGGGAGGGCTTCTCAGAAGGCTTTGACGCACACCTTAATATAGAACAGATGAACAAGACATCTGTTGAATTGTTTCAAATGTATGACGACCATAGAAAGCGTGGTTGCCCTGTTCCCACTGAGCCAGAATTCAGAGGCTACTATGCATTGCTAAAGCTAGACAAACATCCCGGATATAAGGTGGAAACTGCAGAGCTGTCCCTTGACCTGGCAAAGATGACTCCCGAGAT

Ace file of the UniGene sp_v3.0_unigene43473 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	92%

Source	Gene names
Sma3	F28L1.23; G1121; GSVIVT00019869001; OsI_27093; OsJ_25352; PHYPADRAFT_163375; POPTRDRAFT_804785; RCOM_0678840; VITISV_030218;

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	0.0	-
Sma3	SAC3/GANP/Nin1/mts3/eIF-3 p25	IPR005062	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G06290.1	SAC3/GANP/Nin1/mts3/eIF-3 p25 family chr3:1899123-1907297 REVERSE LENGTH=1697	1.4013e-45	90%
RefSeq	Arabidopsis thaliana	NP_187280.3	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein [Arabidopsis thaliana]	2.8026e-45	90%
RefSeq	Populus trichocarpa	XP_002315539.1	predicted protein [Populus trichocarpa]	4.0e-37	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6HDJ8

Fln msg: Distance to subject end: 972 aas, your sequence is shorter than subject: 82 - 1515

Fln protein: LCEYTRGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGCPVPTEPEFRGYYALLKLDKHPGYKVETAELSLDLAKMTPE

Protein Length: 83

Fln nts: GTTATGTGAATATACAAGGGGGGAGGGCTTCTCAGAAGGCTTTGACGCACACCTTAATATAGAACAGATGAACAAGACATCTGTTGAATTGTTTCAAATGTATGACGACCATAGAAAGCGTGGTTGCCCTGTTCCCACTGAGCCAGAATTCAGAGGCTACTATGCATTGCTAAAGCTAGACAAACATCCCGGATATAAGGTGGAAACTGCAGAGCTGTCCCTTGACCTGGCAAAGATGACTCCCGAGAT

Fln Alignment:

CL16595Contig1___LCEYTRGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKRGCPVPTEPEFRGYYALLKLDKHPGYKVETAELSLDLAKMTPE
F6HDJ8_______________LCEYTKGEGFSEGFDAHLNIEQMNKTSVELFQMYDDHRKKGIIVPTEKEFRGYYALLKLDKHPGYKVEPAELSLDLAKMTPE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain