UniGene Name: sp_v3.0_unigene43427
Length: 128 nt
UniGene Fasta |
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>sp_v3.0_unigene43427
A |
Ace file of the UniGene sp_v3.0_unigene43427 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Protein ROS1, putative n=1 Tax=Ricinus communis RepID=B9SRG6_RICCO | - | - | 7.0e-15 | 95% |
FL-Next | Isoform 1 of Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME | - | - | 0.0 | 90% |
Sma3 | Repressor of silencing 1 | - | - | 2.116e-08 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | Hydrolases, Glycosylases, Hydrolyzing N-glycosyl compounds. | EC:3.2.2.- | - | 1.35e-12 | - |
Source | Gene names |
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Sma3 | At2g36490; At3g10010; At4g34060; At5g04560/At5g04570/At5g04580; DME; DML1; DML2; DML3; DNG701; F1O11.12; F28A23.180; GSVIVT00021675001; GSVIVT00034990001; NtROS1; NtROS2a; NtROS2b; NtROS3; OJ1288_D09.7; OSIGBa0105P02.5; OSJNBa0018J19.2; Os01g0217900; Os02 |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | DNA binding | GO:0003677 | Molecular Function | 0.0 | - |
Sma3 | catalytic activity | GO:0003824 | Molecular Function | 0.0 | - |
Sma3 | DNA-(apurinic or apyrimidinic site) lyase activity | GO:0003906 | Molecular Function | 0.0 | - |
Sma3 | endonuclease activity | GO:0004519 | Molecular Function | 0.0 | - |
Sma3 | iron ion binding | GO:0005506 | Molecular Function | 0.0 | - |
Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
Sma3 | DNA N-glycosylase activity | GO:0019104 | Molecular Function | 0.0 | - |
Sma3 | 4 iron, 4 sulfur cluster binding | GO:0051539 | Molecular Function | 0.0 | - |
Sma3 | DNA repair | GO:0006281 | Biological Process | 0.0 | - |
Sma3 | base-excision repair | GO:0006284 | Biological Process | 0.0 | - |
Sma3 | DNA methylation | GO:0006306 | Biological Process | 0.0 | - |
Sma3 | regulation of gene expression by genetic imprinting | GO:0006349 | Biological Process | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
Sma3 | maintenance of DNA methylation | GO:0010216 | Biological Process | 0.0 | - |
Sma3 | negative regulation of chromatin silencing | GO:0031936 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Regulator of chromosome condensation, RCC1 | IPR000408 | - | 0.0 | - |
Sma3 | Alcohol dehydrogenase superfamily, zinc-type | IPR002085 | - | 0.0 | - |
Sma3 | HhH-GPD domain | IPR003265 | - | 0.0 | - |
Sma3 | Endonuclease III-like, iron-sulphur cluster loop motif | IPR003651 | - | 0.0 | - |
Sma3 | Endonuclease III, iron-sulphur binding site | IPR004035 | - | 0.0 | - |
Sma3 | Alcohol dehydrogenase, C-terminal | IPR013149 | - | 0.0 | - |
Sma3 | Alcohol dehydrogenase GroES-like | IPR013154 | - | 0.0 | - |
Sma3 | NAD(P)-binding domain | IPR016040 | - | 0.0 | - |
Sma3 | AT hook, DNA-binding motif | IPR017956 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT5G04560.2 | DME HhH-GPD base excision DNA repair family protein chr5:1309786-1318091 FORWARD LENGTH=1987 | 4.0e-19 | 90% |
RefSeq | Arabidopsis thaliana | NP_196076.2 | transcriptional activator DEMETER [Arabidopsis thaliana] | 5.0e-19 | 90% |
RefSeq | Populus trichocarpa | XP_002316518.1 | predicted protein, partial [Populus trichocarpa] | 2.0e-19 | 90% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q8LK56-1
Fln msg: Distance to subject end: 937 aas, your sequence is shorter than subject: 42 - 1729
Fln protein:
M
Protein Length:
43
Fln nts:
A
Fln Alignment:
CL16117Contig1___MHLVQGDRRFSQWKGSVVDSVVGAFLTQNVSDHLSSSAFISL
Q8LK56-1_____________MHLVQGDRRFSPWKGSVVDSVIGVFLTQNVSDHLSSSAFMSL
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain