SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43413

Length: 213 nt

UniGene Fasta

>sp_v3.0_unigene43413
ATTGATGTTGACGGTAGTTTGGCTAGTCCTCGCCTTCGTTTCAGCGAAGATGGTTCCCTATTGGCAGTCACAATGAATGACAATGGCATAAAGATCTTACCCAACGCAGAGGGATTTCACTTAATTCGCATGCTGGAGAGTAGATCCTTTGAAGGAACGAAGGTGCCACCAGAGACAATGGCAACAAAGTGACTGCTCCTGGTTCCCTTCGCA

Ace file of the UniGene sp_v3.0_unigene43413

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	5.0e-14	63%
FL-Next	sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	52%
Sma3	WD-40 repeat protein-like	-	-	8.19e-08	-

Source	Gene names
Sma3	GSVIVT00014065001; Os08g0162100; OsI_27917; OsJ_26138; P0577B11.132; PHYPADRAFT_150439; POPTRDRAFT_596940; RCOM_1324430; SBB1_14t00008; WD1;

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16830.1	TPR2 TOPLESS-related 2 chr3:5731709-5737531 FORWARD LENGTH=1131	6.0e-12	52%
RefSeq	Arabidopsis thaliana	NP_188306.2	Topless-related 2 protein [Arabidopsis thaliana]	8.0e-12	52%
RefSeq	Populus trichocarpa	XP_002328986.1	predicted protein [Populus trichocarpa]	9.0e-17	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LRZ0

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 435 aas, your sequence is shorter than subject: 64 - 1131

Fln protein: IDVDGSLASPRLRFSEDGSLLAVTMNDNGIKILPNAEGFHLIRMLESRSFEGTKVPPETMATK*

Protein Length: 65

Fln nts: ATTGATGTTGACGGTAGTTTGGCTAGTCCTCGCCTTCGTTTCAGCGAAGATGGTTCCCTATTGGCAGTCACAATGAATGACAATGGCATAAAGATCTTACCCAACGCAGAGGGATTTCACTTAATTCGCATGCTGGAGAGTAGATCCTTTGAAGGAACGAAGGTGCCACCAGAGACAATGGCAACAAAGTGACTGCTCCTGGTTCCCTTCGCA

Fln Alignment:

CL15922Contig1___IDVDGSLAS-PRLRFSEDGSLLAVTMNDNGIKILPNAEGFHLIRMLESRSFEGTK
Q9LRZ0_______________VEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILANTDGLRTLRAFEARSFEASK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain