SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43378

Length: 221 nt

UniGene Fasta

>sp_v3.0_unigene43378
ATTTCTTTGCTGGGTTGTTGTTGTTGCTGATGTCAGAAGAAAATGCATTTTGGACATTGACCTGCATAATGGACGACTATTTTTATGGCTACTATTCAGAGGAGATGGTGGAAGCTCAGGTGGACCAACTTGTATTTGAGGAGTTAGTTCGGGAATGTTTTCCTAAGTTGGTCAGTCATTTGGACAAGTTGGGCATAGAGGTGGCACTGGTCACTGGGCCA

Ace file of the UniGene sp_v3.0_unigene43378

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RabGAP/TBC domain-containing protein-like [Oryza sativa Japonica Group]	-	-	2.0e-26	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	42%
Sma3	Run and tbc1 domain containing 3, plant, putative	-	-	2.594e-09	-

Source	Gene names
Sma3	At2g37290; At2g39280; GSVIVT00023082001; GSVIVT00029489001; LOC_Os03g17540; OSJNBa0009E21.5; Os01g0835000; Os03g0283800; Os05g0465100; OsI_04332; OsI_11058; OsI_20262; OsJ_03987; OsJ_10393; OsJ_18844; P0506B12.13; PHYPADRAFT_120221; PHYPADRAFT_168144; POP

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	Rab GTPase activator activity	GO:0005097	Molecular Function	-
Sma3	regulation of Rab GTPase activity	GO:0032313	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Rab-GTPase-TBC domain	IPR000195	-	0.0	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G55020.1	Ypt/Rab-GAP domain of gyp1p superfamily protein chr3:20389278-20394713 REVERSE LENGTH=777	4.0e-31	76%
RefSeq	Arabidopsis thaliana	NP_181266.2	RabGAP/TBC domain-containing protein [Arabidopsis thaliana]	3.0e-32	76%
RefSeq	Populus trichocarpa	XP_002315267.1	predicted protein, partial [Populus trichocarpa]	9.0e-33	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPY7

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 73 - 373

Fln protein: FFAGLLLLLMSEENAFWTLTCIMDDYFYGYYSEEMVEAQVDQLVFEELVRECFPKLVSHLDKLGIEVALVTGP

Protein Length: 74

Fln nts: ATTTCTTTGCTGGGTTGTTGTTGTTGCTGATGTCAGAAGAAAATGCATTTTGGACATTGACCTGCATAATGGACGACTATTTTTATGGCTACTATTCAGAGGAGATGGTGGAAGCTCAGGTGGACCAACTTGTATTTGAGGAGTTAGTTCGGGAATGTTTTCCTAAGTTGGTCAGTCATTTGGACAAGTTGGGCATAGAGGTGGCACTGGTCACTGGGCCA

Fln Alignment:

CL15389Contig1___FFAGLLLLLMSEENAFWTLTCIM----DDYFYGYYSEEMVEAQVDQLVFEELVRECFPKLVSHLDK
C0PPY7_______________FLAGLLLLYMSEEDAFWLLVALLKGAVNAPMEGLYLVGLPLVQQYLFQFERLVKEQLPKLGTHFDQ

SSRs (tot: 1)

Start position	End position	Sequence	Length
14	26	GTT GTT GTT GTT G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain