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UniGene Name: sp_v3.0_unigene43135
Length: 243 nt
 UniGene Fasta
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| >sp_v3.0_unigene43135
C |
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Ace file of the UniGene sp_v3.0_unigene43135
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If you push the Download ace button, you will download an ace file of this UniGene.
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| Annotations |
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| Source | Descriptions | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| AutoFact | WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ | - | - | 5.0e-18 | 87% |
| FL-Next | sp=Topless-related protein 2; Arabidopsis thaliana (Mouse-ear cress). | - | - | 0.0 | 85% |
| Sma3 | WD-repeat protein, putative | - | - | 1.688e-09 | - |
| Source | Gene names |
|---|---|
| Sma3 | AT3G15880; At1g15750; At1g80490; At3g15880; At5g27030; CTV.2; F7H2.9; GSVIVT00000315001; GSVIVT00003228001; GSVIVT00014065001; GSVIVT00016938001; GSVIVT00022669001; GSVIVT00032753001; LOC_Os03g14980; MtrDRAFT_AC147963g18v2; OJ1115_B04.1; Os01g0254100; Os0 |
| Source | GOs | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
| Sma3 | protein binding | GO:0005515 | Molecular Function | 0.0 | - |
| Sma3 | ATP binding | GO:0005524 | Molecular Function | 0.0 | - |
| Sma3 | transcription repressor activity | GO:0016564 | Molecular Function | 0.0 | - |
| Sma3 | protein homodimerization activity | GO:0042803 | Molecular Function | 0.0 | - |
| Sma3 | apoptotic process | GO:0006915 | Biological Process | 0.0 | - |
| Sma3 | response to auxin stimulus | GO:0009733 | Biological Process | 0.0 | - |
| Sma3 | xylem and phloem pattern formation | GO:0010051 | Biological Process | 0.0 | - |
| Sma3 | primary shoot apical meristem specification | GO:0010072 | Biological Process | 0.0 | - |
| Source | InterPros | Term | Type | e value | Identity |
|---|---|---|---|---|---|
| Sma3 | Histidine phosphatase superfamily, clade-2 | IPR000560 | - | 0.0 | - |
| Sma3 | Leucine-rich repeat | IPR001611 | - | 0.0 | - |
| Sma3 | WD40 repeat | IPR001680 | - | 0.0 | - |
| Sma3 | NB-ARC | IPR002182 | - | 0.0 | - |
| Sma3 | LisH dimerisation motif | IPR006594 | - | 0.0 | - |
| Sma3 | CTLH, C-terminal LisH motif | IPR006595 | - | 0.0 | - |
| Sma3 | LisH dimerisation motif, subgroup | IPR013720 | - | 0.0 | - |
| Sma3 | WD40/YVTN repeat-like-containing domain | IPR015943 | - | 0.0 | - |
| Sma3 | F-box associated interaction domain | IPR017451 | - | 0.0 | - |
| Sma3 | WD40-repeat-containing domain | IPR017986 | - | 0.0 | - |
| Sma3 | Cytochrome b5, heme-binding site | IPR018506 | - | 0.0 | - |
| Sma3 | WD40 repeat, conserved site | IPR019775 | - | 0.0 | - |
| Sma3 | IPR019782 | - | 0.0 | - |
| Source | Species | ID | Description | e value | Identity |
|---|---|---|---|---|---|
| ATG | Arabidoptis thaliana | AT3G16830.1 | TPR2 TOPLESS-related 2 chr3:5731709-5737531 FORWARD LENGTH=1131 | 2.0e-22 | 85% |
| RefSeq | Arabidopsis thaliana | NP_188306.2 | Topless-related 2 protein [Arabidopsis thaliana] | 3.0e-22 | 85% |
| RefSeq | Populus trichocarpa | XP_002328986.1 | predicted protein [Populus trichocarpa] | 7.0e-23 | 85% |
| Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q9LRZ0
Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 81 - 1131
Fln protein:
H
Protein Length:
82
Fln nts:
C
Fln Alignment:
CL12727Contig1___KVSLFNMMTFKVMTTFMPLP-AATFLAFHPQHNNIITIGMQDSSIQKYNVRVDEV
Q9LRZ0_______________KVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSSIHIYNVRVDEV
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain
