SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene43053

Length: 308 nt

UniGene Fasta

>sp_v3.0_unigene43053
GTTCTGGAGGTTACGGGGATTACAGCATTTGATTTTAGTAAAGTGATAGAGAGCTTTGTGAGACACGAGGAAACTCTGCCAAGGGAGTTGAAGCGGCATCTCAATGCTTTAGAGGAACGCCTTCTTGAAAGTCTGGCATGGGAAAAAGGTTCCTCTATGTACAATTCATTGATTGTTGCTAAGCCATGCCTTGCAGCTGAAATCAATCGTTTGGGCCTACTAGCTGATCCCATGCCATTGTTGGATATGATCTCAAGTCCTTACAATCCTTCTCTCAGAGGGTTTCAAATTGCTGTTTCTGCTCAGAG

Ace file of the UniGene sp_v3.0_unigene43053

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retinoblastoma-related protein 1 n=2 Tax=Oryza sativa RepID=RBR1_ORYSJ	-	-	4.0e-36	81%
FL-Next	sp=Retinoblastoma-related protein 1; Oryza sativa subsp. japonica (Rice).	-	-	0.0	81%
Sma3	Retinoblastoma-related protein 1	-	-	5.199e-19	-

Source	Gene names
Sma3	At3g12280; F28J15.11; GSVIVT00032361001; GSVIVT00037976001; LOC_Os11g32900; NtRb1; Os11g0533500; OsI_029040; OsI_36358; OsJ_34123; PHYPADRAFT_10629; PHYPADRAFT_84532; POPTRDRAFT_547794; RB; RB1; RBL1501; RBL1502; RBL901; RBR; RBR1; RBR2; RBR3; RCOM_126467

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	transcription factor binding	GO:0008134	Molecular Function	-
Sma3	G1/S transition of mitotic cell cycle	GO:0000082	Biological Process	-
Sma3	regulation of gene expression by genetic imprinting	GO:0006349	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	embryo sac development	GO:0009553	Biological Process	-
Sma3	double fertilization forming a zygote and endosperm	GO:0009567	Biological Process	-
Sma3	trichome morphogenesis	GO:0010090	Biological Process	-
Sma3	generative cell differentiation	GO:0022619	Biological Process	-
Sma3	regulation of DNA endoreduplication	GO:0032875	Biological Process	-
Sma3	interspecies interaction between organisms	GO:0044419	Biological Process	-
Sma3	regulation of cell cycle	GO:0051726	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protamine P1	IPR000221	-	-
Sma3	D-alanine--D-alanine ligase/VANA/B/C, conserved site	IPR000291	-	-
Sma3	Retinoblastoma-associated protein, B-box	IPR002719	-	-
Sma3	Retinoblastoma-associated protein, A-box	IPR002720	-	-
Sma3		IPR006670	-	-
Sma3	Cyclin-like	IPR013763	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G12280.1	RBR1, RBR, RB, ATRBR1, RB1 retinoblastoma-related 1 chr3:3913671-3918433 REVERSE LENGTH=1013	3.0e-39	77%
RefSeq	Arabidopsis thaliana	NP_001189868.1	Retinoblastoma-related protein 1 [Arabidopsis thaliana]	4.0e-39	77%
RefSeq	Populus trichocarpa	XP_002297730.1	hypothetical protein POPTRDRAFT_547794 [Populus trichocarpa]	7.0e-39	76%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q84QM3

Fln msg: Distance to subject end: 345 aas, your sequence is shorter than subject: 102 - 1010

Fln protein: VLEVTGITAFDFSKVIESFVRHEETLPRELKRHLNALEERLLESLAWEKGSSMYNSLIVAKPCLAAEINRLGLLADPMPLLDMISSPYNPSLRGFQIAVSAQ

Protein Length: 103

Fln nts: GTTCTGGAGGTTACGGGGATTACAGCATTTGATTTTAGTAAAGTGATAGAGAGCTTTGTGAGACACGAGGAAACTCTGCCAAGGGAGTTGAAGCGGCATCTCAATGCTTTAGAGGAACGCCTTCTTGAAAGTCTGGCATGGGAAAAAGGTTCCTCTATGTACAATTCATTGATTGTTGCTAAGCCATGCCTTGCAGCTGAAATCAATCGTTTGGGCCTACTAGCTGATCCCATGCCATTGTTGGATATGATCTCAAGTCCTTACAATCCTTCTCTCAGAGGGTTTCAAATTGCTGTTTCTGCTCAGAG

Fln Alignment:

CL11803Contig1___VLEVTGITAFDFSKVIESFVRHEETLPRELKRHLNALEERLLESLAWEKGSSMYNSLIVAKPCLAAEINRLGLLADPMPLLDMISSPYNPSLRG
Q84QM3_______________VLEKTGITAFDLSKVIESFVRHEDTLPRELKRHLNSLEERLLESMAWEKGSSMYNSLIVARPTLSAEINRLGLLAEPMPSLDAIAAHHNISLEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain