SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42983

Length: 1143 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene42983 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein helicase in vascular tissue and tapetum [Arabidopsis thaliana] gb\|AEC08442.1\| protein helicase in vascular tissue and tapetum [Arabidopsis thaliana]	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%
Sma3	ATP-dependent RNA helicase, putative	-	-	1.995e-16	-

Source	Gene names
Sma3	At1g58050; At2g01130; At2g30800; At2g35920; B1143G03.7-1; F11I4_16; GSVIVT00003545001; GSVIVT00009138001; GSVIVT00017756001; GSVIVT00018850001; GSVIVT00030427001; GSVIVT00035410001; MICPUCDRAFT_197; MICPUCDRAFT_45131; MICPUCDRAFT_45812; MICPUN_65643; MICP

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	double-stranded RNA binding	GO:0003725	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	chalcone isomerase activity	GO:0045430	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	Fructose-bisphosphate aldolase, class-I	IPR000741	-	-
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Single-stranded nucleic acid binding R3H	IPR001374	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Chalcone isomerase, subgroup	IPR003466	-	-
Sma3	RWD domain	IPR006575	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Aldolase-type TIM barrel	IPR013785	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	Tubulin, conserved site	IPR017975	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30800.1	HVT1, ATVT-1 helicase in vascular tissue and tapetum chr2:13120585-13126635 REVERSE LENGTH=1299	62%
RefSeq	Arabidopsis thaliana	NP_850154.2	protein helicase in vascular tissue and tapetum [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002307569.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: Distance to subject end: 129 aas, No stop codon before M and low homology subject, your sequence is longer than subject: 379 - 348

Fln protein: MANSESEEGAVLVFLPGWEEITRCRDRLRDSPIFRDNSKYLILPLHSMVPSAEQKKVFKHPPPGVRKIVLSTNISETAITIDDITFVIDSGRMKEKSYDPYSNVSTLQTTWISKASAKQREGRAGRCQPGTCYHLFSKVRAAALPDYQVPEIKRTPLEELCLQVKILDPDCNISEFIYKAIDAPVDLAVRNAITLLQDIGALTRGEKLTELGKQLGSLPVHPSTSKMLLFAILLNCLDPALTIACAAGYREPFVLPMAPHEKKRAFAAKMEFTSCYGGYSDHLAVVAAFDQWREAKKKGQQAAFCAKNFVSHGTMVMLDGMRKQLWNELTQKGLVSEDLQSCSLNAQHPGILRAVLLAGLYPMVGILLPPLPSGQKAVV

Protein Length: 380

Fln nts: TCTAAT_-_ATGGCCAATTCTGAATCTGAGGAAGGAGCTGTGCTGGTTTTTTTACCAGGATGGGAGGAAATAACTCGCTGTAGGGATCGCTTGCGAGATTCTCCTATCTTTAGAGATAATTCAAAGTATCTAATACTGCCTCTTCACTCCATGGTTCCCTCTGCTGAGCAGAAGAAAGTGTTCAAACATCCACCACCCGGTGTTCGTAAGATTGTCCTCTCCACAAATATTTCTGAAACTGCAATAACTATTGATGATATCACTTTTGTTATTGACAGTGGGCGCATGAAAGAGAAAAGTTATGACCCTTATAGTAATGTCTCCACGCTTCAGACAACTTGGATATCTAAGGCAAGTGCTAAGCAGCGAGAAGGGCGTGCTGGTCGGTGCCAACCAGGAACCTGTTATCATCTCTTCTCCAAAGTCCGTGCTGCAGCTTTGCCTGACTATCAGGTCCCTGAAATTAAACGAACTCCACTTGAGGAACTCTGTTTGCAGGTCAAAATACTAGATCCTGATTGTAATATTAGTGAATTCATTTACAAGGCAATTGATGCACCAGTCGATCTTGCTGTTCGTAATGCAATCACATTGCTCCAAGATATAGGGGCTTTAACGCGAGGAGAAAAGCTTACAGAACTGGGAAAGCAGCTGGGTTCCTTACCAGTTCATCCCTCAACAAGCAAGATGTTACTATTTGCAATATTATTAAACTGCCTTGATCCTGCTTTGACAATAGCCTGTGCTGCAGGCTATAGAGAGCCTTTTGTTTTGCCAATGGCACCACACGAAAAAAAGCGAGCCTTTGCAGCAAAGATGGAGTTCACGTCATGCTATGGTGGCTACAGTGATCATTTGGCAGTGGTTGCAGCATTTGATCAGTGGAGAGAAGCAAAGAAAAAGGGACAGCAAGCTGCATTCTGTGCTAAGAATTTTGTTTCTCATGGAACCATGGTTATGTTGGATGGTATGCGTAAGCAGTTGTGGAATGAGCTTACTCAGAAGGGATTAGTCTCAGAGGATTTACAGTCCTGCAGCTTGAATGCTCAGCATCCAGGTATTCTACGTGCAGTTCTATTAGCTGGTTTGTATCCAATGGTAGGAATATTGTTGCCACCTCTTCCCAGTGGTCAGAAAGCAGTAGTG

Fln Alignment:

CL10256Contig1___VPEIKRTPLEELCLQVKILDPDCNISEFIYKAIDAPVDLAVRNAITLLQDIGALTRGEKLTELGKQLGSLPVHPSTSKMLLFAILLNCLDPALTIACAAGYREPFVLPMAPHEKKRAFAAKMEFTSCYGGYSDHLAVVAAFDQWREAKKKGQQAAFCAKNFVSHGTMVMLDGMRK
D5ADJ5_______________VPEIQRTNLGNVVLLLKSLNIE-NLLDFDF--MDPPPQDNILNSMYQLWVLGALDNVGRLTALGRKMVEFPLDPPLAKMLLIGEQLGCVNEVLTIVSMLSVPSVFFRPKDRAEESDAAREKF-----FVPESDHLTLLNVYQQWKSNQYRGD---WCNDHF------LQVKGLRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain