SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42967

Length: 287 nt

UniGene Fasta

>sp_v3.0_unigene42967
GAACTTCTTAGTGTTGGGCCAACATTTCTCATTATGAAGTTTATTGAGAGTATTCTTGCCATTATGATGATGTATGGAGCCTATGCAGCAACCCGTAGTGTAGCTGTTTCAAGGATATTTCTTCGTTTTCTATTGTTTGGAGTTCTTTCGGTGTCTATGTCTTATTTTTATGTGAAGGCACTTCAACAACCGGGTGAAAGTTCTATATATTTTAGGATATATATTTTTGTTGTCGGAGTGTATGCTGTTATCCAGTTTTTTTTGAGTTTCCTTATGCGAATTCCTGC

Ace file of the UniGene sp_v3.0_unigene42967

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative callose synthase catalytic subunit n=1 Tax=Gossypium hirsutum RepID=Q9XEG1_GOSHI	-	-	1.0e-27	60%
FL-Next	sp=Callose synthase 9; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%

Source	ECs	Term	Type	e value	Identity
Sma3	1,3-beta-glucan synthase.	EC:2.4.1.34	-	8.148e-08	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		8.148e-08	%

Source	Gene names
Sma3	At3g07160; CALS9; CFL1; GSL10; GSVIVT00024721001; RCOM_0146080; T1B9.18;

Source	GOs	Term	Type	Identity
Sma3	1,3-beta-D-glucan synthase complex	GO:0000148	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	1,3-beta-D-glucan synthase activity	GO:0003843	Molecular Function	-
Sma3	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	-
Sma3	regulation of cell shape	GO:0008360	Biological Process	-
Sma3	microsporogenesis	GO:0009556	Biological Process	-
Sma3	developmental growth	GO:0048589	Biological Process	-
Sma3	callose deposition in cell wall	GO:0052543	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G07160.1	ATGSL10, gsl10, CALS9 glucan synthase-like 10 chr3:2265142-2279383 REVERSE LENGTH=1890	2.0e-30	54%
RefSeq	Arabidopsis thaliana	NP_187372.5	callose synthase [Arabidopsis thaliana]	2.0e-30	54%
RefSeq	Populus trichocarpa	XP_002322219.1	predicted protein [Populus trichocarpa]	6.0e-25	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SFU6

Fln msg: Distance to subject end: 1272 aas, your sequence is shorter than subject: 95 - 1890

Fln protein: ELLSVGPTFLIMKFIESILAIMMMYGAYAATRSVAVSRIFLRFLLFGVLSVSMSYFYVKALQQPGESSIYFRIYIFVVGVYAVIQFFLSFLMRIP

Protein Length: 96

Fln nts: GAACTTCTTAGTGTTGGGCCAACATTTCTCATTATGAAGTTTATTGAGAGTATTCTTGCCATTATGATGATGTATGGAGCCTATGCAGCAACCCGTAGTGTAGCTGTTTCAAGGATATTTCTTCGTTTTCTATTGTTTGGAGTTCTTTCGGTGTCTATGTCTTATTTTTATGTGAAGGCACTTCAACAACCGGGTGAAAGTTCTATATATTTTAGGATATATATTTTTGTTGTCGGAGTGTATGCTGTTATCCAGTTTTTTTTGAGTTTCCTTATGCGAATTCCTGC

Fln Alignment:

CL10010Contig1___ELLSVGPTFLIMKFIESILAIMMMYGAYAATRSVAVSRIFLRFLLFGVLSVSMSYFYVKALQQPGESSIYFRIYIFVVGVYAVIQFFLSFLMRIP
Q9SFU6_______________QILSLGPTFVVMKFSESVLEVIMMYGAYSTTRRLAVSRIFLRFIWFGLASVFISFLYVKSLKAPNSDSPIVQLYLIVIAIYGGVQFFFSILMRIP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain