SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42915

Length: 267 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene42915
TCAACCTTCCTGTCTACGGTCCAAGTGTCGAGGAGGTGCAGAGCATCGTGGAGGGGGAGCAGTCCTTCGAAATAGAGAACATGAGGCTTCTCACTGGTTTTCCTGCGCTTCCATTGTTGGACGTTAGAAAAGGGGAAGAGGAGAGGTTTGGGAGAATAGTAAGTAACTTTTACAAATCCGTGTTTGAGAATATTGTGGGAAATCACTTGGGGTCGGAGAAGCATCTGGTTGATGAAATTTTCACGAGGATTGCAAAGAGAGCGGCTG

Ace file of the UniGene sp_v3.0_unigene42915 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Xanthosine N-methyltransferase [Coffea arabica]	-	-	5.0e-06	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%

Source	GOs	Term	Type	e value	Identity
Sma3	methyltransferase activity	GO:0008168	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	SAM dependent carboxyl methyltransferase	IPR005299	-	0.0	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NQW8

Fln msg: Distance to subject end: 21 aas, your sequence is shorter than subject: 88 - 394

Fln protein: NLPVYGPSVEEVQSIVEGEQSFEIENMRLLTGFPALPLLDVRKGEEERFGRIVSNFYKSVFENIVGNHLGSEKHLVDEIFTRIAKRAA

Protein Length: 89

Fln nts: TCAACCTTCCTGTCTACGGTCCAAGTGTCGAGGAGGTGCAGAGCATCGTGGAGGGGGAGCAGTCCTTCGAAATAGAGAACATGAGGCTTCTCACTGGTTTTCCTGCGCTTCCATTGTTGGACGTTAGAAAAGGGGAAGAGGAGAGGTTTGGGAGAATAGTAAGTAACTTTTACAAATCCGTGTTTGAGAATATTGTGGGAAATCACTTGGGGTCGGAGAAGCATCTGGTTGATGAAATTTTCACGAGGATTGCAAAGAGAGCGGCTG

Fln Alignment:

CL9476Contig1___NLPVYGPSVEEVQSIVEGEQSFEIENMRLLTGFPALPLLDVRKGEEERFGRIVSNFYKSVFENIVGNHLGSEKHLVDEIFTRIAKRAA
A9NQW8_______________NIPYYGPSVEELRSIVETENSFEIKSVRVLSGFPLHPLLEVREGEEQMFGRIVGKHYRALFENIVGAHLRWDEYLIDEFFARIANRAA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain