SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42912

Length: 173 nt

UniGene Fasta

>sp_v3.0_unigene42912
CGGCTCATGGCATTGAGTGTGGGCGGCACACGGGTGGTGATAAGCAGCCACCCGGATGTGGCGAGAGAAATTCTGAACAGCTCGTGCTTCGCGGACCGGCCCGTGAAAGAGTCGGCGTACCGGCTTATGTTTCACCGCGCCATCGGTTTCGCTCCCTACGGCGAATACTGGCG

Ace file of the UniGene sp_v3.0_unigene42912

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cytochrome P450 78A3 gb\|AAB94592.1\| CYP78A3p [Glycine max]	-	-	1.0e-18	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Cytochrome P450	-	-	8.073e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.14.-.-	-	2.859e-07	-
Sma3	Flavonoid 3',5'-hydroxylase.	EC:1.14.13.88	-	3.938e-09	-

Source	KEGGs	Term	e value	Identity
Sma3	Flavonoid biosynthesis	00941	3.938e-09	%
Sma3	Flavone and flavonol biosynthesis	00944	3.938e-09	%
Sma3	Biosynthesis of secondary metabolites	01110	3.938e-09	%

Source	Gene names
Sma3	1D05; At1g13710; At1g74110; At2g46660; At3g61880; At5g09970; CYP78; CYP78A1; CYP78A11; CYP78A18; CYP78A2; CYP78A20; CYP78A21v1; CYP78A21v2; CYP78A22; CYP78A23; CYP78A24; CYP78A25; CYP78A29; CYP78A3; CYP78A4; CYP78A9; CYP78D2; CYP78D3v1; CYP78D3v2; F21F14.

Source	GOs	Term	Type	Identity
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Immunoglobulin-like	IPR007110	-	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61880.2	CYP78A9 cytochrome p450 78a9 chr3:22905979-22907890 REVERSE LENGTH=555	1.0e-23	75%
RefSeq	Arabidopsis thaliana	NP_191747.1	cytochrome p450 78a9 [Arabidopsis thaliana]	2.0e-23	75%
RefSeq	Populus trichocarpa	XP_002320887.1	cytochrome P450 [Populus trichocarpa]	2.0e-24	77%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADP0

Fln msg: Distance to subject end: 380 aas, your sequence is shorter than subject: 55 - 432

Fln protein: MALSVGGTRVVISSHPDVAREILNSSCFADRPVKESAYRLMFHRAIGFAPYGEYW

Protein Length: 56

Fln nts: CGGCTC_-_ATGGCATTGAGTGTGGGCGGCACACGGGTGGTGATAAGCAGCCACCCGGATGTGGCGAGAGAAATTCTGAACAGCTCGTGCTTCGCGGACCGGCCCGTGAAAGAGTCGGCGTACCGGCTTATGTTTCACCGCGCCATCGGTTTCGCTCCCTACGGCGAATACTGGCG

Fln Alignment:

CL9428Contig1___VGGTRVVISSHPDVAREILNSSCFADRPVKESAYRLMFHRAIGFAPYGEYW
D5ADP0_______________MGCTRAVICSQPEVAKAILNSSAFADRPIKESAYQLMFDRAIGFAPYSEYW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain