SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42747

Length: 1350 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene42747 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	29%

Source	Gene names
Sma3	PHYPADRAFT_87474;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Armadillo	IPR000225	-	-
Sma3	U box domain	IPR003613	-	-
Sma3	Armadillo-like helical	IPR011989	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PSB5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 116 aas, putative chimeric sequence, your sequence is shorter than subject: 282 - 497

Fln protein: VGILCYLPKTDGRINNALLEAGALDAIVDLLSSGEPSNYKVREGTLIENALGVLLHFTSPSNLNLQTKVLELGTMPLLVRFLLTGSSLSKKRVATALREISENAMNTGIVIQPKSRILCYACSWLASPDPEDICPVHKRICDKGTSSFCLVNAGAVEPLVKTLQEREWQADEAALDALSTILLHDDIWEAGLIEIEKAKGVEPIVQMLKYGRSEAQEKAMLVLNKIFQKLEYRNLYGTAARFPLIDLMQQGTVSTRRRAVAILQLLGEMPKDGDSGCMHSQ*

Protein Length: 283

Fln nts: TGTAGGTATCCTATGCTATCTTCCAAAAACTGATGGTCGGATTAACAATGCGCTTTTGGAAGCAGGTGCTTTGGATGCAATAGTTGATTTGCTTTCTTCAGGAGAACCAAGCAATTACAAAGTCAGAGAAGGTACCCTAATAGAGAATGCTCTTGGAGTGTTATTACATTTCACCAGTCCTTCAAACTTGAATCTTCAGACAAAAGTATTAGAACTTGGTACAATGCCTTTGCTTGTTCGGTTTCTCTTAACAGGTTCCTCCCTTTCAAAGAAGAGGGTTGCAACTGCTCTCAGGGAAATTTCAGAAAATGCAATGAATACAGGCATCGTTATACAGCCTAAAAGTAGAATCCTTTGCTACGCTTGTAGTTGGTTGGCAAGTCCTGATCCTGAAGATATTTGTCCTGTACACAAGAGGATTTGTGACAAGGGAACATCATCATTTTGCTTGGTCAATGCTGGAGCAGTAGAACCTCTTGTGAAGACACTACAAGAGAGAGAGTGGCAGGCGGATGAAGCTGCCTTAGATGCACTCAGTACTATTCTTCTGCATGATGACATCTGGGAAGCAGGGTTGATAGAAATTGAAAAGGCTAAAGGTGTAGAACCTATTGTGCAAATGCTCAAGTATGGCAGGTCCGAGGCTCAGGAGAAGGCCATGCTGGTCTTGAACAAGATTTTCCAAAAGTTGGAGTACAGAAATCTTTATGGAACAGCTGCACGGTTCCCATTGATAGATCTAATGCAGCAAGGAACAGTATCTACCAGGAGAAGGGCTGTAGCAATTTTACAGCTCTTAGGTGAGATGCCAAAAGATGGAGATTCTGGCTGCATGCATAGCCAGTGA___AACAGGCTGGATTAGATATTAATATCAATAAATTTAATCAGAGCAGATTGGATATCATCAAGCCAAGCCAGTCATTGCTATTTATAGGCATCACTTTCAATATATTTTGTCAGATCAGATTGGATTCCATCAAGCGAAGCCAATCATTTCTTATATGTAGATATCAATATCAGTACATTTGGTTAGATCAGATTGGATTCCATCAAATCAATCCAGTCATTGCTTACATATCAGATTAGATTGGATTCCATATTGCGAAGCCAGTAGCCAATTGATTCTCTTCATATGTATATGTATGATCTGTTTGAACTTTGAAGAGTATTGTTTTATCTTGACAATGTCAGCAACTACATGTTGGCTCTCATCCTTCCCTCCATTTTATTTGGAGCTGGAGGAGGAATTAAGAGTCAAGATGTGAAAATTTCTACTACTATACTCGTATATTTGTATGAGGTGAAGATTTTGATTCTCCCTATACAATTGATCAAAAATGCCTTGTGTGC

Fln Alignment:

CL7745Contig1___EDICPVHKRICDKGTSSFCLVNAGAVEPLVKTLQEREWQADEAALDALSTILLHDDIWEAGLIEIEKAKGVEPIVQMLKYGRSEAQEKAMLVLNKIFQKLEYRNLYGTAARF-PLIDLMQQGTVSTRRRAVAIL
C0PSB5_______________EEIRLLAKRNAD---NRLLIAEAGAIPQLVKLLSSTDMKTQEHAVTALLNLSIHSS--NKGF--IVQAGAINRIIDVLKHGSTEARENAAATLFSLSVVDENKVIIGASGAIPPLVDLLRDGTVRGKKDAATAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain