SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42469

Length: 1014 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene42469 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Zinc finger CCCH domain-containing protein 4; Short=OsC3H4 dbj\|BAE95808.1\| ATP-dependent RNA helicase A -like [Oryza sativa Japonica Group]	-	-	0.0	56%
FL-Next	sp=Zinc finger CCCH domain-containing protein 4; Oryza sativa subsp. japonica (Rice).	-	-	0.0	58%

Source	Gene names
Sma3	At2g47680; GSVIVT00027989001; LOC_Os01g15300; Os01g0256800; OsI_01237; OsJ_01156; P0711E10.43; POPTRDRAFT_741453; RCOM_1178050;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G47680.1	zinc finger (CCCH type) helicase family protein chr2:19545828-19550871 REVERSE LENGTH=1015	57%
RefSeq	Arabidopsis thaliana	NP_182290.1	zinc finger CCCH domain-containing protein 31 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002327857.1	predicted protein, partial [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q1EHT7

Fln msg: Distance to subject end: 532 aas, your sequence is shorter than subject: 337 - 1007

Fln protein: DEVHERSVESDLVLTCVKQFMLRNNKIRLVLMSATADITRYRDYFKDLGKDERVEVIALPSSLVQRSVFQCRVMYLEQVLELLKRNPECLSDLESSKEGRDEADINDEVHYLIRDLVMHIHEQEQDLKNSILVFLPTYRSLEQQWLLLRHSRMCFKVHVLHSSIDIEQATRAMQICHSSRKVILATNIAESSVTIPGLSYVIDSCRSLDIFWNEDNKTHVPHLVWVSKSQADQRKGRTGRTCDGQVFRLVSQHLFDSFDKYEKPAMQKLSLRKQVLTISCAASKAMNDPKVLFQRALDPPNWKTIQDALDLLVSLDALKAPSHHRGKYEPTLYGNLL

Protein Length: 338

Fln nts: TGGATGAAGTGCATGAAAGATCAGTTGAATCCGACCTGGTTCTAACATGTGTAAAACAGTTTATGTTGAGAAACAATAAGATCAGGTTGGTGCTAATGTCTGCGACTGCGGATATAACAAGATACAGGGACTACTTTAAGGATCTTGGTAAGGATGAAAGGGTTGAAGTGATTGCACTGCCGAGTTCCTTAGTGCAGCGTTCTGTTTTTCAATGCAGAGTGATGTACCTTGAACAGGTACTTGAACTTCTTAAAAGGAATCCTGAATGTCTATCAGATTTGGAATCATCTAAAGAAGGCCGTGATGAAGCTGATATAAATGATGAAGTGCACTACCTGATTCGAGATCTGGTGATGCATATTCATGAACAAGAGCAAGACCTAAAGAATAGCATTTTGGTTTTCCTACCAACATATCGGTCCCTGGAGCAGCAGTGGCTGCTTTTAAGACATTCTAGGATGTGTTTCAAGGTCCATGTTCTTCACAGTAGCATTGATATTGAACAAGCAACAAGAGCTATGCAAATTTGTCATTCTTCTAGAAAGGTAATACTCGCAACAAACATTGCAGAATCTTCTGTGACCATACCTGGGCTATCTTACGTTATTGATTCATGCCGGTCATTAGACATATTTTGGAATGAAGACAACAAAACACATGTGCCGCATCTGGTTTGGGTGTCAAAATCTCAGGCAGATCAACGCAAAGGAAGGACAGGCCGTACATGTGATGGTCAGGTCTTCCGATTGGTTTCACAGCATTTGTTTGATAGTTTTGATAAATATGAAAAGCCAGCGATGCAAAAGCTGTCATTGAGAAAGCAGGTTCTCACGATTAGCTGTGCTGCATCAAAAGCCATGAATGACCCCAAAGTTCTATTTCAGAGGGCCCTTGACCCACCGAATTGGAAAACTATTCAAGATGCACTAGATTTGTTGGTTTCTTTAGATGCTCTGAAGGCACCATCTCATCATAGGGGAAAGTATGAACCAACATTATATGGCAATTTGCTTG

Fln Alignment:

CL3451Contig1___DEVHERSVESDLVLTCVKQFMLRNNKIRLVLMSATADITRYRDYFKDLGKDERVEVIALPSSLVQRSVFQCRVMYLEQVLELLKRNPECLSDLE-SSKEGRDEADINDEVHYLIRDLVMHIHEQEQDLKNSILVFLPTYRSLEQQWLLLRHSRMCFKVHVLHSSIDIEQATRAMQICHSSRKVILATNIAESSVTIPGLSYVIDSCRSLDIFWNEDNKTHVPHLVWVSKSQADQRKGRTGRTCDGQVFRLVSQHLFDSFDKYEKPAMQKLSLRKQVLTISCAASKAMNDPKVLFQRALDPPNWKTIQXXXXXXXXXXXXXAPSHHRGKYEPTLYGNLL
Q1EHT7_______________DEIHERSVESDLVLACVKQFMMKKNDLRLILMSATADITRYKDYFRDLGRGERVEVIAIPSS-PRSSIFQRKVLYLEQIVDILKMDSESLSTKYCSGPNTAADAGLKPDVYELIHRLLLHIHQNEPDIGKSILVFLPTYYALEQQWIRLLSASSMFKVHILHRSIDTDEALQTMKVSKSCRKVILATNIAESSVTIPGVAYVIDSCRSLQVYWDPIRKTDSAELVWVSKSQAEQRKGRTGRTCDGQIYRLVTGPFYNSLTDHEYPAILRLSLREQVLMICCAESRAMNDPHVLLQKVLDPPDSDVVEDALESLVQIRALDKPTSPRGRHEPTFYGCLL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain