SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42427

Length: 1802 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene42427

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	fatty acyl-CoA reductase 1 [Arabidopsis thaliana] sp\|Q39152.1\|FACR1_ARATH RecName: Full=Fatty acyl-CoA reductase 1 emb\|CAA68191.1\| male sterility 2-like protein [Arabidopsis thaliana] dbj\|BAB09122.1\| male sterility 2-like protein [Arabidopsis thaliana] gb	-	-	0.0	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Sma3	Acyl CoA reductase	-	-	1.988e-12	-

Source	Gene names
Sma3	AT3G44540; AT4g33790; At3g44540; At3g44550; At3g44560; At4g33790; At5g22500; F14L2_100; F14L2_90; GSVIVT00001317001; GSVIVT00011405001; GSVIVT00011407001; OJ1150_A11.29; OJ1155_H10.32; OSJNBa0064M11.38; OSJNBb0024C16.130; Os08g0298700; Os08g0557800; Os09g

Source	GOs	Term	Type	Identity
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Male sterility	IPR004262	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Male sterility, NAD-binding	IPR013120	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRT2

Fln msg: Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 465 - 510

Fln protein: MKLELFKTLREQYGDKVESFILQKVVPLVGDIAADDSLGIDSESTREQLWENLDAIVNNAASTVLDDRYDISLNVNAKGAKNIVEFAKRCRKLQILLHVSTAYVAGRGSGKITERPVKILETVTTDNGSDDESGIPLRLDIEEEFGLIEKTVAKIHMNSSTTTTESKGSVKDTEAKHLIELGLKRARSFGWPNTYSFTKAMGEMLVEKVRGNLPVVIIRPSIIESTFAEPFPGWIEGSRTVDTLIVRYGRGRMSSFLADPDLILDVIPADLVVNAMIVAMATHACENGLFIYHSASSVGNPLLYPVVRDEAYKYFSQHPCLDKEGNVIHVKEFPFLNSMESFRRYMNLHYKAPLQVVGAVNKIMCYIMMFTERYNMNFTERYNMNFTERYNEMLRNYNKVMYLAELYEPYAFFQGRFDITNTEGLLSKISEDDRMAFNFDVKCIDWPHYYSKIHIPGLVKYVLK*

Protein Length: 466

Fln nts: CTTGGCATACGAAATCTTGGAAATGCAACTATATCACAGTCGCCACTTGGAAACGTCTGTTCTTTTTCTATGATCACTGGAAATGCATGCTCTAACTTGTCACGGTATATAGATGGATCAATTGCTGCAATAATTATGGGTGCCCTGCTGCTAGTTTTTCTGGAGAAAATCTTACGTACGCAACTTGGCATTAAGCACATTTTTGTTTTGTTAAGAGCGAAAGATGTGGCATCTGTGAGACTCCCTTTTAAAAAACGAAGTT_-_ATGAAATTGGAGTTGTTCAAGACTTTGAGGGAGCAATATGGTGACAAAGTCGAAAGCTTCATATTGCAGAAAGTTGTTCCACTAGTTGGAGACATTGCAGCAGATGATAGTCTTGGAATTGATTCAGAGAGTACCCGGGAACAACTCTGGGAAAATCTGGACGCCATTGTAAATAATGCAGCAAGCACCGTGCTTGATGACAGATATGATATTTCTCTAAATGTCAACGCTAAGGGAGCAAAGAATATCGTGGAATTCGCCAAACGATGTCGTAAACTCCAAATCCTCCTGCACGTCTCCACCGCTTACGTTGCCGGACGTGGAAGTGGAAAAATAACAGAGAGGCCTGTGAAGATTCTAGAAACTGTAACGACTGACAATGGCTCTGATGACGAAAGCGGTATACCTCTCCGTTTAGATATTGAGGAAGAATTTGGTTTAATAGAGAAAACAGTGGCGAAGATACATATGAACTCCTCAACTACTACAACTGAAAGCAAAGGTTCTGTCAAAGATACCGAAGCCAAGCATCTCATAGAATTGGGTTTGAAAAGGGCAAGAAGTTTTGGGTGGCCGAACACATATTCATTCACCAAAGCTATGGGAGAAATGCTTGTGGAGAAAGTGAGAGGAAATCTTCCAGTAGTCATCATCCGACCAAGCATTATTGAAAGCACGTTCGCAGAACCTTTCCCTGGCTGGATAGAAGGCAGCAGAACTGTTGACACTCTGATAGTAAGATACGGAAGAGGACGAATGTCATCTTTCTTAGCTGATCCTGATCTCATCTTGGACGTGATTCCAGCAGATCTGGTAGTAAACGCGATGATAGTAGCTATGGCCACACATGCCTGCGAAAACGGTCTTTTTATTTATCACTCCGCATCATCTGTTGGAAATCCATTACTGTACCCAGTAGTAAGGGATGAGGCATATAAGTATTTTTCGCAGCACCCGTGTCTGGACAAAGAAGGAAACGTAATTCACGTGAAAGAGTTTCCCTTTCTAAATAGCATGGAGAGCTTTCGCAGATACATGAATCTACATTACAAAGCACCTCTCCAGGTAGTTGGGGCAGTGAACAAAATCaTGTGTTACATCATGATGTTCACAGAACGTTACAACATGAATTTCACAGAACGTTACAACATGAATTTCACTGAACGTTACAATGAAATGCTTCGTAATTACAACAAAGTCATGTATTTAGCAGAGTTGTACGAGCCTTACGCCTTCTTTCAGGGAAGGTTCGACATAACAAACACCGAAGGCTTGCTGAGCAAGATTTCGGAGGATGACAGGATGGCGTTCAACTTCGATGTCAAATGCATTGATTGGCCCCATTACTACTCGAAGATTCATATCCCTGGACTAGTCAAGTACGTGCTCAAGTGACAGACTGTACTTGGAAAGTTTGTAAACGGTTCTATTTTATTCTATGGCTGTCGACGAGGACATATCTTTGAGATAAATAAGATAATTCAATCTTGCTTATGGAATAGATTGTAATTTCCAAAGTATATGGTAATATTTTCAAATA

Fln Alignment:

CL2554Contig1___KNEVMKLELFKTLREQYGDKVESFILQKVVPLVGDIAADDSLGIDSESTREQLWENLDAIVNNAASTVLDDRYDISLNVNAKGAKNIVEFAKRCRKLQILLHVSTAYVAGRGSGKITERPVKILETVTTDNGSDDESGIPLRLDIEEEFGLIEKTVAKIHMNSSTTTTESKGSVKDTEA-KHLIELGLKRARSFGWPNTYSFTKAMGEMLVEKVRGNLPVVIIRPSIIESTFAEPFPGWIEGSRTVDTLIVRYGRGRMSSFLADPDLILDVIPADLVVNAMIVAMATHACENGLFIYHSASSVGNPLLYPVVRDEAYKYFSQHPCLDKEGNVIHVKEFPFLNSMESFRRYMNLHYKAPLQVVGAVNKIMCYIMMFTERYNMNFTERYNMNFTERYNEMLRNYNKVMYLAELYEPYAFFQGRFDITNTEGLLSKISEDDRMAFNFDVKCIDWPHYYSKIHIPGLVKYVLK
B8LRT2_______________KNEVMGAELFKTLRGQHGDNFENFVFQKVVPVVGDVAGGHNLGIDKESTREHLWNILDAIVNNAASTMFDDRYDISLNVNTRGAENIVEFAKRCRKLQILLHVSTAYVVGRGSGRIKESPLKIGESMTAGNELEDENGPPLSLDIEAEFGLLENTLAKLHMDSSATGTTSTRSVQDKEAIKHLKELGLERARRFGWPNTYSFTKAMGEMVVENRRENLPVVILRPTIIESTLAEPFPGWMEGTRTMDTFIVGYGKGRISFFLGDPELFLD-IPADMVVNQMMVAMATHAYQNDLFIYHVASSVGNPLRYSLLSDVAYNYFSKNPCVSNDGKIIRVKEMRFLKSMSSFRLHMFQRYKAPLLVLGVVNEV---ISIFTAR------------FTARYNQMLRNYNFMMYLAELYEPYVLFQGSFDITNTERLLEKVSVQDLEAFNFDVKCIDWVEYLSNVHIPGVVKYVLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain