SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene42416

Length: 560 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene42416
GTTACTAAAGAGGAAGGATCATTTGATTGGTTCAAGGGAGTCATGAATGAAGTGGCAGAAATTGATCTAAAGGGCATAATTGAGTTGCACAACTATTGCACAAGTGTTTATGAAGAGGGTGATGCTCGATCAGCATTGATCGCTATGTTGCAGGCACTAAATCATGCCAAACATGGTGTTGATATTGTATCGGGCACCAGGGTTTGCACACACTTTGCCAAGCCTAATTGGAGAAACGTCTTCAAGAGTATTGCTCTCAAGCACAAAGACTCCAGAGTGGGGGTTTTCTACTGTGGTCCTGCTGCTCTTATTGACGATTTGAGGCAGCTTTCATTGGATTTCACACGCAAAACTTCCACCAGATTTGACTTTCACAAGGAAAACTTCTGATGCGCAAGCGGTTCAATTGTTTGTGTGTTATTAACTTATTTGTGCATTCATGTTATTAACACCCCAAGAGGCAGGGAATCGAAGAGTCTATCCCTTACTTTCCCAGAAGTTATAGCCACTGTCTGAAGAGAAAAAATGGGTCTCTTTTGACAGTTGTTTTCTTTGTATAT

Ace file of the UniGene sp_v3.0_unigene42416 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Respiratory burst oxidase protein 1 (Fragment) n=1 Tax=Picea abies RepID=E9N9T3_PICAB	-	-	0.0	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Respiratory burst oxidase, putative	-	-	1.901e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on a peroxide as acceptor, Peroxidases.	EC:1.11.1.-	-	5.359e-40	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glutathione metabolism	00480		5.359e-40	%
Sma3	Oxidoreductases, Acting on NADH or NADPH, With a oxygen as acceptor.	EC:1.6.3.-	-	4.62428e-44	-
Sma3	NAD(P)H oxidase.	EC:1.6.3.1	-	1.352e-15	-

Source	Gene names
Sma3	At1g09090; At1g19230; At1g64060; At3g45810; At4g11230; At4g25090; At5g07390; At5g47910; At5g51060; At5g60010; B1060H01.16; B1164G11.26; F13M23.230; F16L2.20; F22C12.18; F7G19.3; F7G19.4; F8L21.20; GSVIVT00002525001; GSVIVT00006232001; GSVIVT00006234001; G

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	cytosolic ribosome	GO:0022626	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	NAD(P)H oxidase activity	GO:0016174	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	flavin adenine dinucleotide binding	GO:0050660	Molecular Function	-
Sma3	oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor	GO:0050664	Molecular Function	-
Sma3	respiratory burst involved in defense response	GO:0002679	Biological Process	-
Sma3	oxygen and reactive oxygen species metabolic process	GO:0006800	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	ethylene mediated signaling pathway	GO:0009873	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	negative regulation of programmed cell death	GO:0043069	Biological Process	-
Sma3	hydrogen peroxide biosynthetic process	GO:0050665	Biological Process	-
Sma3	defense response by callose deposition	GO:0052542	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome b245, heavy chain	IPR000778	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	FAD-binding 8	IPR013112	-	-
Sma3	Ferric reductase, NAD binding	IPR013121	-	-
Sma3	Flavoprotein transmembrane component	IPR013130	-	-
Sma3	NADPH oxidase Respiratory burst	IPR013623	-	-
Sma3	Ferredoxin reductase-type FAD-binding domain	IPR017927	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G07390.1	ATRBOHA, RBOHA respiratory burst oxidase homolog A chr5:2336063-2339728 REVERSE LENGTH=902	75%
RefSeq	Arabidopsis thaliana	NP_196356.1	Respiratory burst oxidase-A [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002318793.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABF5

Fln msg: your sequence is shorter than subject: 130 - 358

Fln protein: VTKEEGSFDWFKGVMNEVAEIDLKGIIELHNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRNVFKSIALKHKDSRVGVFYCGPAALIDDLRQLSLDFTRKTSTRFDFHKENF*

Protein Length: 131

Fln nts: GTTACTAAAGAGGAAGGATCATTTGATTGGTTCAAGGGAGTCATGAATGAAGTGGCAGAAATTGATCTAAAGGGCATAATTGAGTTGCACAACTATTGCACAAGTGTTTATGAAGAGGGTGATGCTCGATCAGCATTGATCGCTATGTTGCAGGCACTAAATCATGCCAAACATGGTGTTGATATTGTATCGGGCACCAGGGTTTGCACACACTTTGCCAAGCCTAATTGGAGAAACGTCTTCAAGAGTATTGCTCTCAAGCACAAAGACTCCAGAGTGGGGGTTTTCTACTGTGGTCCTGCTGCTCTTATTGACGATTTGAGGCAGCTTTCATTGGATTTCACACGCAAAACTTCCACCAGATTTGACTTTCACAAGGAAAACTTCTGA___TGCGCAAGCGGTTCAATTGTTTGTGTGTTATTAACTTATTTGTGCATTCATGTTATTAACACCCCAAGAGGCAGGGAATCGAAGAGTCTATCCCTTACTTTCCCAGAAGTTATAGCCACTGTCTGAAGAGAAAAAATGGGTCTCTTTTGACAGTTGTTTTCTTTGTATAT

Fln Alignment:

CL2370Contig2___VTKEEGSFDWFKGVMNEVAEIDLKGIIELHNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRNVFKSIALKHKDSRVGVFYCGPAALIDDLRQLSLDFTRKTSTRFDFHKENF
D5ABF5_______________VTREEGSFDWFKGVMNEVAEIDQKGIIELHNYCTSVYEEGDARSALIAMLQALNHAKHGVDIVSGTRVCTHFAKPNWRNVFKSITLKHKDSRVGVFYCGPAALTDDLRQLSLDFTRKTSTRFDFHKENF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain